SAM-VI riboswitch structure and signature for ligand discrimination (Q92024447)

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26 April 2020

title

SAM-VI riboswitch structure and signature for ligand discrimination (English)

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26 April 2020

4

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26 April 2020

Aiming Ren

8

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26 April 2020

author name string

Aiai Sun

1

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26 April 2020

Catherina Gasser

2

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26 April 2020

Fudong Li

3

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26 April 2020

Stefan Mair

5

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26 April 2020

Olga Krasheninina

6

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26 April 2020

Ronald Micura

7

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26 April 2020

publication date

16 December 2019

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26 April 2020

published in

Nature Communications

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26 April 2020

volume

10

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26 April 2020

issue

1

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26 April 2020

page(s)

5728

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Chemo-enzymatic treatment of RNA to facilitate analyses

26 April 2020

cites work

1 reference

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The structure of the SAM/SAH-binding riboswitch

23 February 2021

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Rare variants of the FMN riboswitch class in Clostridium difficile and other bacteria exhibit altered ligand specificity

23 February 2021

1 reference

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Structure and ligand binding of the SAM-V riboswitch

23 February 2021

1 reference

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SAM-VI RNAs Selectively Bind S-adenosylmethionine and Exhibit Similarities to SAM-III Riboswitches.

23 February 2021

1 reference

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Riboswitch diversity and distribution

23 February 2021

1 reference

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Conformational Rearrangements of Individual Nucleotides during RNA-Ligand Binding Are Rate-Differentiated

23 February 2021

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SAM/SAH Analogs as Versatile Tools for SAM-Dependent Methyltransferases

23 February 2021

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Common themes and differences in SAM recognition among SAM riboswitches

23 February 2021

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Structure-guided design of fluorescent S-adenosylmethionine analogs for a high-throughput screen to target SAM-I riboswitch RNAs

23 February 2021

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23 February 2021

A decade of riboswitches

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Fluorescent DNA Labeling by N-Mustard Analogues ofS-Adenosyl-L-Methionine

23 February 2021

1 reference

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Synthesis of an azide-bearing N-mustard analogue of S-adenosyl-L-methionine

23 February 2021

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Recognition of S-adenosylmethionine by riboswitches

23 February 2021

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A powerful approach for the selection of 2-aminopurine substitution sites to investigate RNA folding

23 February 2021

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The dynamic nature of RNA as key to understanding riboswitch mechanisms

23 February 2021

1 reference

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Conformational capture of the SAM-II riboswitch

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Rational design of SAM analogues targeting SAM-II riboswitch aptamer

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

The SAM‐responsive SMK box is a reversible riboswitch

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Riboswitches and the RNA world

23 February 2021

1 reference

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Riboswitches: Structures and Mechanisms

23 February 2021

1 reference

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Structural basis for recognition of S-adenosylhomocysteine by riboswitches

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

23 February 2021

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

PHENIX: a comprehensive Python-based system for macromolecular structure solution

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Preparation and crystallization of riboswitch-ligand complexes.

23 February 2021

1 reference

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Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism

23 February 2021

1 reference

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Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine

23 February 2021

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Riboswitch effectors as protein enzyme cofactors

23 February 2021

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Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling

23 February 2021

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The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

23 February 2021

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Structure of the SAM-II riboswitch bound to S-adenosylmethionine

23 February 2021

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Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control.

23 February 2021

1 reference

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Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

23 February 2021

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One-step high-throughput assay for quantitative detection of beta-galactosidase activity in intact gram-negative bacteria, yeast, and mammalian cells

23 February 2021

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The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase

23 February 2021

1 reference

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Molecular-recognition characteristics of SAM-binding riboswitches

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Design, synthesis, and preliminary biological evaluation of a DNA methyltransferase-directed alkylating agent

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

23 February 2021

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Coot: model-building tools for molecular graphics

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

Refinement of macromolecular structures by the maximum-likelihood method

23 February 2021

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S-adenosylmethionine: nothing goes to waste

23 February 2021

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An mRNA structure that controls gene expression by binding S-adenosylmethionine

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6914780

The riboswitch-mediated control of sulfur metabolism in bacteria

23 February 2021

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Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.

23 February 2021

1 reference

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Sensing Small Molecules by Nascent RNA

23 February 2021

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An mRNA structure that controls gene expression by binding FMN

23 February 2021

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

23 February 2021

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Genetic control by a metabolite binding mRNA

23 February 2021

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Sequence and structural conservation in RNA ribose zippers

23 February 2021

1 reference

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Tertiary Motifs in RNA Structure and Folding

23 February 2021

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The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria

23 February 2021

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10.1038/S41467-019-13600-9

23 February 2021

Identifiers

DOI

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26 April 2020

0 references

1 reference

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26 April 2020

PubMed publication ID

31844059

1 reference