RNA-GPS predicts high-resolution RNA subcellular localization and highlights the role of splicing (Q90710938)

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15 April 2020

title

RNA-GPS predicts high-resolution RNA subcellular localization and highlights the role of splicing (English)

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15 April 2020

1

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15 April 2020

Furqan M. Fazal

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15 April 2020

author name string

Kevin R Parker

2

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15 April 2020

Howard Chang

4

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15 April 2020

James Zou

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15 April 2020

publication date

27 March 2020

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15 April 2020

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Basic local alignment search tool

15 April 2020

cites work

1 reference

12 December 2020

The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site

1 reference

12 December 2020

TIA-1 and TIAR activate splicing of alternative exons with weak 5' splice sites followed by a U-rich stretch on their own pre-mRNAs

1 reference

12 December 2020

The role of the 3' untranslated region in mRNA sorting to the vicinity of mitochondria is conserved from yeast to human cells

1 reference

12 December 2020

Stabilization of Urokinase and Urokinase Receptor mRNAs by HuR Is Linked to Its Cytoplasmic Accumulation Induced by Activated Mitogen-Activated Protein Kinase-Activated Protein Kinase 2

1 reference

12 December 2020

Dynein anchors its mRNA cargo after apical transport in the Drosophila blastoderm embryo

1 reference

12 December 2020

Quantifying similarity between motifs

1 reference

12 December 2020

Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.

1 reference

12 December 2020

Posttranslational modification of the AU-rich element binding protein HuR by protein kinase Cdelta elicits angiotensin II-induced stabilization and nuclear export of cyclooxygenase 2 mRNA

1 reference

12 December 2020

Hu antigen R (HuR) functions as an alternative pre-mRNA splicing regulator of Fas apoptosis-promoting receptor on exon definition

1 reference

12 December 2020

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

1 reference

12 December 2020

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

1 reference

12 December 2020

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

12 December 2020

mRNA localization: gene expression in the spatial dimension

1 reference

12 December 2020

1 reference

12 December 2020

To localize or not to localize: mRNA fate is in 3'UTR ends

1 reference

12 December 2020

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.

1 reference

12 December 2020

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

1 reference

12 December 2020

Axonal mRNA localization and local protein synthesis in nervous system assembly, maintenance and repair

1 reference

12 December 2020

Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention

1 reference

12 December 2020

An integrated encyclopedia of DNA elements in the human genome

1 reference

12 December 2020

A compendium of RNA-binding motifs for decoding gene regulation.

1 reference

12 December 2020

A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA

1 reference

12 December 2020

The influence of dynein processivity control, MAPs, and microtubule ends on directional movement of a localising mRNA.

1 reference

12 December 2020

HuR regulates alternative splicing of the TRA2β gene in human colon cancer cells under oxidative stress.

1 reference

12 December 2020

Widespread intron retention in mammals functionally tunes transcriptomes

1 reference

12 December 2020

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

1 reference

12 December 2020

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

12 December 2020

In the right place at the right time: visualizing and understanding mRNA localization.

1 reference

12 December 2020

LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells

1 reference

12 December 2020

Alternative splicing affects the subcellular localization of Drosha

1 reference

12 December 2020

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

1 reference

12 December 2020

Multiple Transcript Properties Related to Translation Affect mRNA Degradation Rates in Saccharomyces cerevisiae

1 reference

12 December 2020

Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A.

1 reference

12 December 2020

PTBP1 and PTBP2 Serve Both Specific and Redundant Functions in Neuronal Pre-mRNA Splicing

1 reference

12 December 2020

Dynamic RNA Modifications in Gene Expression Regulation

1 reference

12 December 2020

RNA localization: Making its way to the center stage

1 reference

12 December 2020

Alternative splicing regulates distinct subcellular localization of Epithelial splicing regulatory protein 1 (Esrp1) isoforms

1 reference

12 December 2020

CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophila and human cells

1 reference

12 December 2020

The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier

1 reference

12 December 2020

Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells

1 reference

12 December 2020

RNA localization regulates diverse and dynamic cellular processes.

1 reference

12 December 2020

Alternative 3' UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments

1 reference

12 December 2020

Intron retention is a source of neoepitopes in cancer.

1 reference

12 December 2020

What Are 3' UTRs Doing?

1 reference

12 December 2020

Prediction of LncRNA Subcellular Localization with Deep Learning from Sequence Features

1 reference

12 December 2020

A primer on deep learning in genomics

1 reference

12 December 2020

Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.

1 reference

12 December 2020

Predictive models of subcellular localization of long RNAs

1 reference

12 December 2020

Atlas of Subcellular RNA Localization Revealed by APEX-Seq

1 reference

12 December 2020

SRSF1 and RBM4 differentially modulate the oncogenic effect of HIF-1α in lung cancer cells through alternative splicing mechanism

1 reference

12 December 2020

Prediction of mRNA subcellular localization using deep recurrent neural networks

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.074161.119

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32220894 AND SRC:MED&resulttype=core&format=json

15 April 2020

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