SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes (Q90176997)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

title

SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

author name string

Yue Xing

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

Alan R Dabney

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

Xiao Li

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

Guosong Wang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

Clare A Gill

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

Claudio Casola

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

publication date

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

published in

Frontiers in Genetics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

page(s)

82

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

11 April 2020

copyright license

start time

21 February 2020

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

1 reference

12 December 2020

Initial sequencing and analysis of the human genome

1 reference

12 December 2020

Structural variation in the human genome

1 reference

12 December 2020

An initial map of insertion and deletion (INDEL) variation in the human genome.

1 reference

12 December 2020

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

12 December 2020

The Sequence Alignment/Map format and SAMtools

1 reference

12 December 2020

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

1 reference

12 December 2020

Relative mutation rates of each nucleotide for another estimated from allele frequency spectra at human gene loci

1 reference

12 December 2020

Copy number variation in human health, disease, and evolution

1 reference

12 December 2020

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

1 reference

12 December 2020

Genome structural variation discovery and genotyping

1 reference

12 December 2020

Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV

1 reference

12 December 2020

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

1 reference

12 December 2020

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

1 reference

12 December 2020

cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate

1 reference

12 December 2020

GemSIM: general, error-model based simulator of next-generation sequencing data

1 reference

12 December 2020

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

1 reference

12 December 2020

Copy number variation detection and genotyping from exome sequence data

1 reference

12 December 2020

A robust model for read count data in exome sequencing experiments and implications for copy number variant calling

1 reference

12 December 2020

Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth

1 reference

12 December 2020

Application of whole exome sequencing to identify disease-causing variants in inherited human diseases

1 reference

12 December 2020

Wessim: a whole-exome sequencing simulator based on in silico exome capture

1 reference

12 December 2020

RSVSim: an R/Bioconductor package for the simulation of structural variations

1 reference

12 December 2020

Copy number polymorphism in plant genomes

1 reference

12 December 2020

EXCAVATOR: detecting copy number variants from whole-exome sequencing data

1 reference

12 December 2020

Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control

1 reference

12 December 2020

Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes

1 reference

12 December 2020

SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data

1 reference

12 December 2020

Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data

1 reference

12 December 2020

An evaluation of copy number variation detection tools from whole-exome sequencing data

1 reference

12 December 2020

CANOES: detecting rare copy number variants from whole exome sequencing data

1 reference

12 December 2020

Exome sequence read depth methods for identifying copy number changes

1 reference

12 December 2020

Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays

1 reference

12 December 2020

SCNVSim: somatic copy number variation and structure variation simulator

1 reference

12 December 2020

Whole-genome CNV analysis: advances in computational approaches

1 reference

12 December 2020

Evaluation of somatic copy number estimation tools for whole-exome sequencing data.

1 reference

12 December 2020

Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.).

1 reference

12 December 2020

CNVs into the wild: screening the genomes of conifer trees (Picea spp.) reveals fewer gene copy number variations in hybrids and links to adaptation

1 reference

12 December 2020

Pysim-sv: a package for simulating structural variation data with GC-biases.

1 reference

12 December 2020

An evaluation of copy number variation detection tools for cancer using whole exome sequencing data

1 reference

12 December 2020

Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data

1 reference

12 December 2020

From Genomes to GENE-omes: Exome Sequencing Concept and Applications in Crop Improvement

1 reference

12 December 2020

Connecting Proteomics to Next‐Generation Sequencing: Proteogenomics and Its Current Applications in Biology

1 reference

12 December 2020

CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing

1 reference

12 December 2020

Genome-Wide Copy Number Variation Detection Using NGS: Data Analysis and Interpretation

1 reference

12 December 2020

A machine-learning approach for accurate detection of copy number variants from exome sequencing

1 reference

12 December 2020

Identifiers

DOI

10.3389/FGENE.2020.00082

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32153642 AND SRC:MED&resulttype=core&format=json

11 April 2020

PubMed publication ID

32153642

1 reference