Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction (Q90066010)

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11 April 2020

title

Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction (English)

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3

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8

Mikhail S Gelfand

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11 April 2020

author name string

Olga M Sigalova

1

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11 April 2020

Andrei V Chaplin

2

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11 April 2020

Pavel V Shelyakin

4

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11 April 2020

Vsevolod A Filaretov

5

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11 April 2020

Evgeny E Akkuratov

6

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11 April 2020

Valentina Burskaia

7

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11 April 2020

language of work or name

English

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publication date

12 September 2019

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volume

20

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issue

1

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11 April 2020

page(s)

710

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Nucleoid condensation in Escherichia coli that express a chlamydial histone homolog.

11 April 2020

cites work

1 reference

12 December 2020

The product of unr, the highly conserved gene upstream of N-ras, contains multiple repeats similar to the cold-shock domain (CSD), a putative DNA-binding motif

1 reference

12 December 2020

Basic local alignment search tool

1 reference

12 December 2020

Major cold shock protein of Escherichia coli

1 reference

12 December 2020

Estimating the population size for capture-recapture data with unequal catchability

1 reference

12 December 2020

A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues

1 reference

12 December 2020

Short-sequence DNA repeats in prokaryotic genomes

1 reference

12 December 2020

Two nucleotide transport proteins in Chlamydia trachomatis, one for net nucleoside triphosphate uptake and the other for transport of energy

1 reference

12 December 2020

Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus...

1 reference

12 December 2020

Molecular switches--the ON and OFF of bacterial phase variation.

1 reference

12 December 2020

Computational analysis of the polymorphic membrane protein superfamily of Chlamydia trachomatis and Chlamydia pneumoniae

1 reference

12 December 2020

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

1 reference

12 December 2020

Gene ontology: tool for the unification of biology

1 reference

12 December 2020

Three temporal classes of gene expression during the Chlamydia trachomatis developmental cycle.

1 reference

12 December 2020

Differential expression of Pmp10 in cell culture infected with Chlamydia pneumoniae CWL029.

1 reference

12 December 2020

Chlamydia trachomatis cytotoxicity associated with complete and partial cytotoxin genes

1 reference

12 December 2020

Microbial minimalism: genome reduction in bacterial pathogens

1 reference

12 December 2020

Properties of the glucose-6-phosphate transporter from Chlamydia pneumoniae (HPTcp) and the glucose-6-phosphate sensor from Escherichia coli (UhpC).

1 reference

12 December 2020

Molecular analysis of the multiple GroEL proteins of Chlamydiae

1 reference

12 December 2020

Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae

1 reference

12 December 2020

Polymorphisms in Chlamydia trachomatis tryptophan synthase genes differentiate between genital and ocular isolates

1 reference

12 December 2020

Inhibition of chlamydial infectious activity due to P2X7R-dependent phospholipase D activation.

1 reference

12 December 2020

From the inside out--processing of the Chlamydial autotransporter PmpD and its role in bacterial adhesion and activation of human host cells

1 reference

12 December 2020

Structure of the translocator domain of a bacterial autotransporter

1 reference

12 December 2020

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

12 December 2020

The chlamydial developmental cycle

1 reference

12 December 2020

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

1 reference

12 December 2020

Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism.

1 reference

12 December 2020

Inhibition of chlamydiae by primary alcohols correlates with the strain-specific complement of plasticity zone phospholipase D genes

1 reference

12 December 2020

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

1 reference

12 December 2020

The Neolithic revolution of bacterial genomes.

1 reference

12 December 2020

Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms

1 reference

12 December 2020

In silico identification of functional divergence between the multiple groEL gene paralogs in Chlamydiae

1 reference

12 December 2020

KaKs_Calculator: calculating Ka and Ks through model selection and model averaging

1 reference

12 December 2020

The RAST Server: rapid annotations using subsystems technology

1 reference

12 December 2020

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

1 reference

12 December 2020

Divergence without difference: phylogenetics and taxonomy of Chlamydia resolved

1 reference

12 December 2020

Independent inactivation of arginine decarboxylase genes by nonsense and missense mutations led to pseudogene formation in Chlamydia trachomatis serovar L2 and D strains

1 reference

12 December 2020

Variable expression of surface-exposed polymorphic membrane proteins in in vitro-grown Chlamydia trachomatis

1 reference

12 December 2020

Comprehensive in silico prediction and analysis of chlamydial outer membrane proteins reflects evolution and life style of the Chlamydiae

1 reference

12 December 2020

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

12 December 2020

Specific chlamydial inclusion membrane proteins associate with active Src family kinases in microdomains that interact with the host microtubule network

1 reference

12 December 2020

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

1 reference

12 December 2020

Inclusion membrane proteins of Protochlamydia amoebophila UWE25 reveal a conserved mechanism for host cell interaction among the Chlamydiae

1 reference

12 December 2020

DRIMM-Synteny: decomposing genomes into evolutionary conserved segments

1 reference

12 December 2020

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

1 reference

12 December 2020

Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

1 reference

12 December 2020

Unity in variety--the pan-genome of the Chlamydiae

1 reference

12 December 2020

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

1 reference

12 December 2020

Accelerated Profile HMM Searches

1 reference

12 December 2020

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

1 reference

12 December 2020

Expression patterns of five polymorphic membrane proteins during the Chlamydia abortus developmental cycle

1 reference

12 December 2020

Developmental stage-specific metabolic and transcriptional activity of Chlamydia trachomatis in an axenic medium

1 reference

12 December 2020

Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range.

1 reference

12 December 2020

Evolution of pan-genomes of Escherichia coli, Shigella spp., and Salmonella enterica

1 reference

12 December 2020

The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation

1 reference

12 December 2020

Chlamydia infection promotes host DNA damage and proliferation but impairs the DNA damage response

1 reference

12 December 2020

Genomic and phenotypic characterization of in vitro-generated Chlamydia trachomatis recombinants

1 reference

12 December 2020

Isolation of a New Chlamydia species from the Feral Sacred Ibis (Threskiornis aethiopicus): Chlamydia ibidis

1 reference

12 December 2020

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

1 reference

12 December 2020

Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes

1 reference

12 December 2020

Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov.

1 reference

12 December 2020

Chlamydial metabolism revisited: interspecies metabolic variability and developmental stage-specific physiologic activities

1 reference

12 December 2020

Evolution, phylogeny, and molecular epidemiology of Chlamydia.

1 reference

12 December 2020

The chlamydiales pangenome revisited: structural stability and functional coherence

1 reference

12 December 2020

Persistent C. pneumoniae infection in atherosclerotic lesions: rethinking the clinical trials

1 reference

12 December 2020

Chlamydia trachomatis polymorphic membrane protein D is a virulence factor involved in early host-cell interactions

1 reference

12 December 2020

Chlamydia genomics: providing novel insights into chlamydial biology

1 reference

12 December 2020

MLGO: phylogeny reconstruction and ancestral inference from gene-order data

1 reference

12 December 2020

Reconceptualizing the chlamydial inclusion as a pathogen-specified parasitic organelle: an expanded role for Inc proteins

1 reference

12 December 2020

Expanded microbial genome coverage and improved protein family annotation in the COG database

1 reference

12 December 2020

Emendation of the family Chlamydiaceae: proposal of a single genus, Chlamydia, to include all currently recognized species

1 reference

12 December 2020

The role of peptidoglycan in chlamydial cell division: towards resolving the chlamydial anomaly

1 reference

12 December 2020

Bioinformatic Analysis of Chlamydia trachomatis Polymorphic Membrane Proteins PmpE, PmpF, PmpG and PmpH as Potential Vaccine Antigens

1 reference

12 December 2020

Following the Footsteps of Chlamydial Gene Regulation.

1 reference

12 December 2020

The bacterial pangenome as a new tool for analysing pathogenic bacteria

1 reference

12 December 2020

The Pfam protein families database: towards a more sustainable future

1 reference

12 December 2020

Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss

1 reference

12 December 2020

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.

1 reference

12 December 2020

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

1 reference

12 December 2020

Chlamydia cell biology and pathogenesis

1 reference

12 December 2020

Pathogenic Chlamydia Lack a Classical Sacculus but Synthesize a Narrow, Mid-cell Peptidoglycan Ring, Regulated by MreB, for Cell Division.

1 reference

12 December 2020

Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen

1 reference

12 December 2020

Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes

1 reference

12 December 2020

The Chlamydia suis Genome Exhibits High Levels of Diversity, Plasticity, and Mobile Antibiotic Resistance: Comparative Genomics of a Recent Livestock Cohort Shows Influence of Treatment Regimes

1 reference

12 December 2020

Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense.

1 reference

12 December 2020

Culture-independent metagenomics supports discovery of uncultivable bacteria within the genus Chlamydia.

1 reference

12 December 2020

1 reference

12 December 2020

Pangenomic Definition of Prokaryotic Species and the Phylogenetic Structure of Prochlorococcus spp.

1 reference

12 December 2020

Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin.

1 reference

12 December 2020

Population effectiveness of opportunistic chlamydia testing in primary care in Australia: a cluster-randomised controlled trial

1 reference

12 December 2020

Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp

1 reference

12 December 2020

10.1186/S12864-019-6059-5

Identifiers

DOI

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11 April 2020

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11 April 2020

PubMed publication ID

31510914

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