Whole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans (Q89823427)

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8 April 2020

title

Whole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans (English)

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8 April 2020

main subject

whole genome sequencing

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Gelsemium elegans

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Yisong Liu

1

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8 April 2020

Qi Tang

2

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8 April 2020

Pi Cheng

3

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8 April 2020

Mingfei Zhu

4

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8 April 2020

Hui Zhang

5

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8 April 2020

Jiazhe Liu

6

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8 April 2020

Mengting Zuo

7

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8 April 2020

Chongyin Huang

8

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8 April 2020

Changqiao Wu

9

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8 April 2020

Zhiliang Sun

10

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8 April 2020

Zhaoying Liu

11

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8 April 2020

publication date

16 August 2019

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Acta Pharmaceutica Sinica B

8 April 2020

published in

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volume

10

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issue

2

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8 April 2020

page(s)

374-382

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Flavonol glycosides from Calotropis gigantea

8 April 2020

cites work

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Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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Pharmacological effect and toxicity of alkaloids from Gelsemium elegans Benth

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Extraction and separation of koumine from Gelsemium alkaloids

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

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12 December 2020

Using geneid to identify genes

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Using RepeatMasker to identify repetitive elements in genomic sequences

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12 December 2020

Antineoplastic effect of koumine in mice bearing H22 solid tumor

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BLAST : architecture and applications

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A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

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The genome of the mesopolyploid crop species Brassica rapa

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Gelsenicine from Gelsemium elegans Attenuates Neuropathic and Inflammatory Pain in Mice

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12 December 2020

Effects of koumine, an alkaloid of Gelsemium elegans Benth., on inflammatory and neuropathic pain models and possible mechanism with allopregnanolone

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12 December 2020

Fast gapped-read alignment with Bowtie 2

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12 December 2020

Gelsemium alkaloids, immunosuppressive agents from Gelsemium elegans.

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12 December 2020

Hi-C: a comprehensive technique to capture the conformation of genomes

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12 December 2020

MIPS PlantsDB: a database framework for comparative plant genome research

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12 December 2020

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

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12 December 2020

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

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12 December 2020

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

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12 December 2020

Gelsemium analgesia and the spinal glycine receptor/allopregnanolone pathway

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12 December 2020

HISAT: a fast spliced aligner with low memory requirements

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12 December 2020

Repbase Update, a database of repetitive elements in eukaryotic genomes

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12 December 2020

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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12 December 2020

A complete bacterial genome assembled de novo using only nanopore sequencing data

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12 December 2020

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

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12 December 2020

Indica rice genome assembly, annotation and mining of blast disease resistance genes

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12 December 2020

Global Genome Biodiversity Network: saving a blueprint of the Tree of Life - a botanical perspective

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12 December 2020

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms

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12 December 2020

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

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12 December 2020

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

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12 December 2020

Comprehensive identification and structural characterization of target components from Gelsemium elegans by high-performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry based on accurate mass databases combined wit

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12 December 2020

A chromosome conformation capture ordered sequence of the barley genome

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12 December 2020

The Genome of Medicinal Plant Macleaya cordata Provides New Insights into Benzylisoquinoline Alkaloids Metabolism.

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12 December 2020

Cytotoxic gelsedine-type indole alkaloids from Gelsemium elegans.

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12 December 2020

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

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12 December 2020

Scaffolding of long read assemblies using long range contact information

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12 December 2020

Fingerprint analysis of Gelsemium elegans by HPLC followed by the targeted identification of chemical constituents using HPLC coupled with quadrupole-time-of-flight mass spectrometry

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12 December 2020

The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance.

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12 December 2020

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

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12 December 2020

Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anti-Cancer and Anti-Malarial Cardenolides

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12 December 2020

Discovery of a short chain dehydrogenase from Catharanthus roseus that produces a novel monoterpene indole alkaloid.

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12 December 2020

Nanopore sequencing and assembly of a human genome with ultra-long reads.

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12 December 2020

Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions.

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12 December 2020

Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality.

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12 December 2020

Gene discovery in Gelsemium highlights conserved gene clusters in monoterpene indole alkaloid biosynthesis

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12 December 2020

fastp: an ultra-fast all-in-one FASTQ preprocessor

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12 December 2020

A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping

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12 December 2020

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

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12 December 2020

10.1016/J.APSB.2019.08.004

Identifiers

DOI

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8 April 2020

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8 April 2020

PubMed publication ID

32082980

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