Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development (Q89820798)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

title

Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

author name string

Cameron P Gallivan

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

Honglei Ren

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

Elizabeth L Read

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

publication date

1 January 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

published in

Frontiers in Genetics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

page(s)

1387

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

8 April 2020

copyright license

start time

31 January 2020

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

scikit-learn

object named as

scikit-learn

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

scikit-learn

0 references

cites work

Metabolic stability and epigenesis in randomly constructed genetic nets

1 reference

12 December 2020

Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells

1 reference

12 December 2020

Intrinsic noise in gene regulatory networks

1 reference

12 December 2020

Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations

1 reference

12 December 2020

Intrinsic and extrinsic contributions to stochasticity in gene expression

1 reference

12 December 2020

Stochastic gene expression as a many-body problem

1 reference

12 December 2020

Refinement of gene expression patterns in the early Xenopus embryo

1 reference

12 December 2020

Transcriptional regulation by the numbers: models.

1 reference

12 December 2020

Bifurcation dynamics in lineage-commitment in bipotent progenitor cells

1 reference

12 December 2020

Effects of molecular memory and bursting on fluctuations in gene expression

1 reference

12 December 2020

Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability

1 reference

12 December 2020

Synchronization and clustering of synthetic genetic networks: a role for cis-regulatory modules

1 reference

12 December 2020

Systems biology of stem cell fate and cellular reprogramming

1 reference

12 December 2020

Forcing cells to change lineages

1 reference

12 December 2020

Short-term memory in gene induction reveals the regulatory principle behind stochastic IL-4 expression

1 reference

12 December 2020

Theory for the stability and regulation of epigenetic landscapes.

1 reference

12 December 2020

Quantifying the Waddington landscape and biological paths for development and differentiation

1 reference

12 December 2020

Global quantification of mammalian gene expression control

1 reference

12 December 2020

A deterministic map of Waddington's epigenetic landscape for cell fate specification

1 reference

12 December 2020

GeneNetWeaver:in silicobenchmark generation and performance profiling of network inference methods

1 reference

12 December 2020

The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post‐Darwinian biology?

1 reference

12 December 2020

Dynamics and memory of heterochromatin in living cells.

1 reference

12 December 2020

A new mechanism of stem cell differentiation through slow binding/unbinding of regulators to genes

1 reference

12 December 2020

Massively parallel measurements of molecular interaction kinetics on a microfluidic platform

1 reference

12 December 2020

Hybrid T-helper cells: stabilizing the moderate center in a polarized system

1 reference

12 December 2020

Time scales in epigenetic dynamics and phenotypic heterogeneity of embryonic stem cells

1 reference

12 December 2020

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

1 reference

12 December 2020

Validation of noise models for single-cell transcriptomics

1 reference

12 December 2020

Bayesian approach to single-cell differential expression analysis

1 reference

12 December 2020

Stem cell differentiation as a many-body problem

1 reference

12 December 2020

Primed and ready: understanding lineage commitment through single cell analysis

1 reference

12 December 2020

DNA-Binding Kinetics Determines the Mechanism of Noise-Induced Switching in Gene Networks

1 reference

12 December 2020

Relative stability of network states in Boolean network models of gene regulation in development.

1 reference

12 December 2020

Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.

1 reference

12 December 2020

Cell Fate Decision as High-Dimensional Critical State Transition

1 reference

12 December 2020

Markov State Models of gene regulatory networks

1 reference

12 December 2020

Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures

1 reference

12 December 2020

A finite state projection algorithm for the stationary solution of the chemical master equation

1 reference

12 December 2020

scEpath: Energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data.

1 reference

12 December 2020

A stochastic and dynamical view of pluripotency in mouse embryonic stem cells

1 reference

12 December 2020

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.

1 reference

12 December 2020

DrImpute: imputing dropout events in single cell RNA sequencing data.

1 reference

12 December 2020

Distribution shapes govern the discovery of predictive models for gene regulation.

1 reference

12 December 2020

Rare-event sampling of epigenetic landscapes and phenotype transitions

1 reference

12 December 2020

Multi-modality in gene regulatory networks with slow promoter kinetics

1 reference

12 December 2020

False signals induced by single-cell imputation

1 reference

12 December 2020

WASABI: a dynamic iterative framework for gene regulatory network inference

1 reference

12 December 2020

Identifiers

DOI

10.3389/FGENE.2019.01387

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32082359 AND SRC:MED&resulttype=core&format=json

8 April 2020

PubMed publication ID

32082359

1 reference