Ribonucleotide discrimination by translesion synthesis DNA polymerases (Q89417794)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29972306 AND SRC:MED&resulttype=core&format=json

4 April 2020

title

Ribonucleotide discrimination by translesion synthesis DNA polymerases (English)

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4 April 2020

author name string

Alexandra Vaisman

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29972306 AND SRC:MED&resulttype=core&format=json

4 April 2020

Roger Woodgate

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29972306 AND SRC:MED&resulttype=core&format=json

4 April 2020

publication date

4 July 2018

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29972306 AND SRC:MED&resulttype=core&format=json

Critical Reviews in Biochemistry and Molecular Biology

4 April 2020

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29972306 AND SRC:MED&resulttype=core&format=json

4 April 2020

volume

53

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issue

4

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4 April 2020

page(s)

382-402

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Creative Commons Attribution 4.0 International

4 April 2020

copyright license

start time

4 July 2018

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April 2022 Public Data File from Crossref

Creative Commons Attribution 4.0 International

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copyright status

copyrighted

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April 2022 Public Data File from Crossref

cites work

Compilation and alignment of DNA polymerase sequences

1 reference

12 December 2020

Sequence logos: a new way to display consensus sequences

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12 December 2020

REV3, a Saccharomyces cerevisiae gene whose function is required for induced mutagenesis, is predicted to encode a nonessential DNA polymerase

1 reference

12 December 2020

Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

1 reference

12 December 2020

Compilation, alignment, and phylogenetic relationships of DNA polymerases

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12 December 2020

Requirement of mammalian DNA polymerase-beta in base-excision repair.

1 reference

12 December 2020

Thymine-thymine dimer bypass by yeast DNA polymerase zeta

1 reference

12 December 2020

Deoxycytidyl transferase activity of yeast REV1 protein

1 reference

12 December 2020

Choosing the right sugar: how polymerases select a nucleotide substrate

1 reference

12 December 2020

DNA polymerase beta: effects of gapped DNA substrates on dNTP specificity, fidelity, processivity and conformational changes

1 reference

12 December 2020

UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

1 reference

12 December 2020

The mutagenesis protein UmuC is a DNA polymerase activated by UmuD', RecA, and SSB and is specialized for translesion replication

1 reference

12 December 2020

Efficient translesion replication past oxaliplatin and cisplatin GpG adducts by human DNA polymerase eta.

1 reference

12 December 2020

Two novel human and mouse DNA polymerases of the polX family

1 reference

12 December 2020

The Y-family of DNA polymerases

1 reference

12 December 2020

Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta

1 reference

12 December 2020

Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignment

1 reference

12 December 2020

Lesion bypass activities of human DNA polymerase mu.

1 reference

12 December 2020

Frameshifts and deletions during in vitro translesion synthesis past Pt-DNA adducts by DNA polymerases beta and eta.

1 reference

12 December 2020

Erroneous incorporation of oxidized DNA precursors by Y-family DNA polymerases

1 reference

12 December 2020

Polymerase mu is a DNA-directed DNA/RNA polymerase

1 reference

12 December 2020

Human DNA polymerase lambda possesses terminal deoxyribonucleotidyl transferase activity and can elongate RNA primers: implications for novel functions

1 reference

12 December 2020

Roles of DNA polymerase zeta and Rev1 protein in eukaryotic mutagenesis and translesion replication

1 reference

12 December 2020

An error-prone family Y DNA polymerase (DinB homolog from Sulfolobus solfataricus) uses a 'steric gate' residue for discrimination against ribonucleotides

1 reference

12 December 2020

Lack of sugar discrimination by human Pol mu requires a single glycine residue

1 reference

12 December 2020

DNA polymerase beta can incorporate ribonucleotides during DNA synthesis of undamaged and CPD-damaged DNA.

1 reference

12 December 2020

WebLogo: A Sequence Logo Generator

1 reference

12 December 2020

Human DNA polymerases lambda and beta show different efficiencies of translesion DNA synthesis past abasic sites and alternative mechanisms for frameshift generation

1 reference

12 December 2020

Pre-steady-state kinetic studies of the fidelity of human DNA polymerase mu.

1 reference

12 December 2020

Portraits of a Y-family DNA polymerase

1 reference

12 December 2020

Structure and mechanism of DNA polymerases

1 reference

12 December 2020

A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates.

1 reference

12 December 2020

Up-regulation of the fidelity of human DNA polymerase lambda by its non-enzymatic proline-rich domain

1 reference

12 December 2020

Translesion synthesis DNA polymerases and control of genome stability

1 reference

12 December 2020

Human DNA polymerase N (POLN) is a low fidelity enzyme capable of error-free bypass of 5S-thymine glycol.

1 reference

12 December 2020

The properties of steric gate mutants reveal different constraints within the active sites of Y-family and A-family DNA polymerases

1 reference

12 December 2020

RecA acts in trans to allow replication of damaged DNA by DNA polymerase V.

1 reference

12 December 2020

The fidelity of DNA synthesis by yeast DNA polymerase zeta alone and with accessory proteins.

1 reference

12 December 2020

Translesion synthesis in Escherichia coli: lessons from the NarI mutation hot spot

1 reference

12 December 2020

8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins

1 reference

12 December 2020

What a difference a decade makes: insights into translesion DNA synthesis

1 reference

12 December 2020

DNA polymerase theta (POLQ) can extend from mismatches and from bases opposite a (6-4) photoproduct

1 reference

12 December 2020

Characterization of nucleotide pools as a function of physiological state in Escherichia coli

1 reference

12 December 2020

The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases

1 reference

12 December 2020

Interaction between DNA Polymerase lambda and RPA during translesion synthesis

1 reference

12 December 2020

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

1 reference

12 December 2020

DNA polymerases beta and lambda as potential participants of TLS during genomic DNA replication on the lagging strand.

1 reference

12 December 2020

Eukaryotic translesion polymerases and their roles and regulation in DNA damage tolerance

1 reference

12 December 2020

The steric gate amino acid tyrosine 112 is required for efficient mismatched-primer extension by human DNA polymerase kappa

1 reference

12 December 2020

Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase ι

1 reference

12 December 2020

The active form of DNA polymerase V is UmuD'(2)C-RecA-ATP.

1 reference

12 December 2020

A novel mechanism of sugar selection utilized by a human X-family DNA polymerase

1 reference

12 December 2020

Critical amino acids in human DNA polymerases eta and kappa involved in erroneous incorporation of oxidized nucleotides

1 reference

12 December 2020

Quantitation of cellular deoxynucleoside triphosphates

1 reference

12 December 2020

Novel enzymatic function of DNA polymerase nu in translesion DNA synthesis past major groove DNA-peptide and DNA-DNA cross-links

1 reference

12 December 2020

Structural diversity of the Y-family DNA polymerases

1 reference

12 December 2020

Role of the DinB homologs Rv1537 and Rv3056 in Mycobacterium tuberculosis

1 reference

12 December 2020

Evolutionary conservation of residues in vertebrate DNA polymerase N conferring low fidelity and bypass activity

1 reference

12 December 2020

Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases

1 reference

12 December 2020

Interaction between DNA Polymerase and Anticancer Nucleoside Analogs

1 reference

12 December 2020

DNA polymerases beta and lambda bypass thymine glycol in gapped DNA structures

1 reference

12 December 2020

Incorporation of gemcitabine and cytarabine into DNA by DNA polymerase beta and ligase III/XRCC1.

1 reference

12 December 2020

Kinetic basis of nucleotide selection employed by a protein template-dependent DNA polymerase

1 reference

12 December 2020

DNA polymerase beta ribonucleotide discrimination: insertion, misinsertion, extension, and coding.

1 reference

12 December 2020

Genome instability due to ribonucleotide incorporation into DNA.

1 reference

12 December 2020

Kinetic basis of sugar selection by a Y-family DNA polymerase from Sulfolobus solfataricus P2.

1 reference

12 December 2020

Differential correction of lagging-strand replication errors made by DNA polymerases {alpha} and {delta}

1 reference

12 December 2020

Lesion bypass activity of DNA polymerase θ (POLQ) is an intrinsic property of the pol domain and depends on unique sequence inserts.

1 reference

12 December 2020

Unlocking the sugar "steric gate" of DNA polymerases

1 reference

12 December 2020

DNA polymerases and cancer.

1 reference

12 December 2020

Structural Mechanism of Ribonucleotide Discrimination by a Y-Family DNA Polymerase

1 reference

12 December 2020

Replication of ribonucleotide-containing DNA templates by yeast replicative polymerases

1 reference

12 December 2020

Molecular Insights into DNA Polymerase Deterrents for Ribonucleotide Insertion

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12 December 2020

Promiscuous DNA synthesis by human DNA polymerase θ

1 reference

12 December 2020

RNase H and postreplication repair protect cells from ribonucleotides incorporated in DNA

1 reference

12 December 2020

Simple and efficient purification of Escherichia coli DNA polymerase V: cofactor requirements for optimal activity and processivity in vitro

1 reference

12 December 2020

Y-family DNA polymerases and their role in tolerance of cellular DNA damage.

1 reference

12 December 2020

Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity

1 reference

12 December 2020

DNA polymerase δ and ζ switch by sharing accessory subunits of DNA polymerase δ

1 reference

12 December 2020

Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development.

1 reference

12 December 2020

The catalytic cycle for ribonucleotide incorporation by human DNA Pol

1 reference

12 December 2020

Pol31 and Pol32 subunits of yeast DNA polymerase δ are also essential subunits of DNA polymerase ζ.

1 reference

12 December 2020

Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival

1 reference

12 December 2020

Causes and consequences of ribonucleotide incorporation into nuclear DNA.

1 reference

12 December 2020

Differential Furanose Selection in the Active Sites of Archaeal DNA Polymerases Probed by Fixed-Conformation Nucleotide Analogues

1 reference

12 December 2020

A four-subunit DNA polymerase ζ complex containing Pol δ accessory subunits is essential for PCNA-mediated mutagenesis

1 reference

12 December 2020

Mechanisms employed by Escherichia coli to prevent ribonucleotide incorporation into genomic DNA by Pol V

1 reference

12 December 2020

Ribonucleotides and manganese ions improve non-homologous end joining by human Polμ.

1 reference

12 December 2020

Ribonucleotides misincorporated into DNA act as strand-discrimination signals in eukaryotic mismatch repair

1 reference

12 December 2020

Ribonucleotides are signals for mismatch repair of leading-strand replication errors

1 reference

12 December 2020

"Gate-keeper" residues and active-site rearrangements in DNA polymerase μ help discriminate non-cognate nucleotides

1 reference

12 December 2020

Aicardi-Goutières syndrome: clues from the RNase H2 knock-out mouse

1 reference

12 December 2020

Cost of rNTP/dNTP pool imbalance at the replication fork

1 reference

12 December 2020

Structure-function analysis of ribonucleotide bypass by B family DNA replicases

1 reference

12 December 2020

hPrimpol1/CCDC111 is a human DNA primase-polymerase required for the maintenance of genome integrity

1 reference

12 December 2020

PrimPol, an archaic primase/polymerase operating in human cells

1 reference

12 December 2020

Repriming of DNA synthesis at stalled replication forks by human PrimPol

1 reference

12 December 2020

Removal of misincorporated ribonucleotides from prokaryotic genomes: an unexpected role for nucleotide excision repair

1 reference

12 December 2020

PPL2 translesion polymerase is essential for the completion of chromosomal DNA replication in the African trypanosome

1 reference

12 December 2020

PrimPol bypasses UV photoproducts during eukaryotic chromosomal DNA replication

1 reference

12 December 2020

Molecular biology. Ribose--an internal threat to DNA

1 reference

12 December 2020

Human Pol ζ purified with accessory subunits is active in translesion DNA synthesis and complements Pol η in cisplatin bypass

1 reference

12 December 2020

The steric gate of DNA polymerase ι regulates ribonucleotide incorporation and deoxyribonucleotide fidelity

1 reference

12 December 2020

Ribonucleotide incorporation by yeast DNA polymerase ζ.

1 reference

12 December 2020

Ribonucleotides in DNA: Origins, repair and consequences

1 reference

12 December 2020

How the misincorporation of ribonucleotides into genomic DNA can be both harmful and helpful to cells

1 reference

12 December 2020

Characterization of three mycobacterial DinB (DNA polymerase IV) paralogs highlights DinB2 as naturally adept at ribonucleotide incorporation

1 reference

12 December 2020

Mycobacterium smegmatis DinB2 misincorporates deoxyribonucleotides and ribonucleotides during templated synthesis and lesion bypass

1 reference

12 December 2020

Ribonucleotides in bacterial DNA

1 reference

12 December 2020

Steric gate residues of Y-family DNA polymerases DinB and pol kappa are crucial for dNTP-induced conformational change

1 reference

12 December 2020

Ribonucleotide triggered DNA damage and RNA-DNA damage responses

1 reference

12 December 2020

Ribonucleotides in DNA: hidden in plain sight.

1 reference

12 December 2020

Alternative solutions and new scenarios for translesion DNA synthesis by human PrimPol.

1 reference

12 December 2020

Redundancy in ribonucleotide excision repair: Competition, compensation, and cooperation

1 reference

12 December 2020

Essential role for polymerase specialization in cellular nonhomologous end joining.

1 reference

12 December 2020

Formation and Repair of Mismatches Containing Ribonucleotides and Oxidized Bases at Repeated DNA Sequences

1 reference

12 December 2020

Unlocking the steric gate of DNA polymerase η leads to increased genomic instability in Saccharomyces cerevisiae

1 reference

12 December 2020

Mechanism of Ribonucleotide Incorporation by Human DNA Polymerase η.

1 reference

12 December 2020

Impact of ribonucleotide incorporation by DNA polymerases β and λ on oxidative base excision repair.

1 reference

12 December 2020

The Balancing Act of Ribonucleotides in DNA

1 reference

12 December 2020

Processing ribonucleotides incorporated during eukaryotic DNA replication.

1 reference

12 December 2020

DNA Polymerases Divide the Labor of Genome Replication.

1 reference

12 December 2020

PrimPol-A new polymerase on the block

1 reference

12 December 2020

Polymerase θ is a robust terminal transferase that oscillates between three different mechanisms during end-joining

1 reference

12 December 2020

Impact of Ribonucleotide Backbone on Translesion Synthesis and Repair of 7,8-Dihydro-8-oxoguanine.

1 reference

12 December 2020

InterPro in 2017-beyond protein family and domain annotations

1 reference

12 December 2020

Ribonucleotide incorporation by human DNA polymerase η impacts translesion synthesis and RNase H2 activity

1 reference

12 December 2020

PrimPol-Prime Time to Reprime

1 reference

12 December 2020

Translesion DNA polymerases in eukaryotes: what makes them tick?

1 reference

12 December 2020

Genome instabilities arising from ribonucleotides in DNA.

1 reference

12 December 2020

Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu.

1 reference

12 December 2020

Human DNA polymerase η accommodates RNA for strand extension

1 reference

12 December 2020

Translesion synthesis DNA polymerase η exhibits a specific RNA extension activity and a transcription-associated function

1 reference

12 December 2020

10.1080/10409238.2018.1483889

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29972306 AND SRC:MED&resulttype=core&format=json

4 April 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29972306 AND SRC:MED&resulttype=core&format=json

4 April 2020

PubMed publication ID

29972306

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