Recovering Gene Interactions from Single-Cell Data Using Data Diffusion (Q89367601)

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3 April 2020

title

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion (English)

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Linas Mazutis

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Dana Pe'er

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Guy Wolf

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Pooja Kathail

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Juozas Nainys

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Roshan Sharma

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Ambrose J Carr

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Cassandra Burdziak

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Kevin R Moon

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Christine L Chaffer

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Diwakar Pattabiraman

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Brian Bierie

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Smita Krishnaswamy

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publication date

28 June 2018

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volume

174

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issue

3

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page(s)

716-729.e27

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Using Bayesian networks to analyze expression data

3 April 2020

cites work

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12 December 2020

Identification of genes periodically expressed in the human cell cycle and their expression in tumors

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12 December 2020

Comparing protein abundance and mRNA expression levels on a genomic scale

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12 December 2020

Causal protein-signaling networks derived from multiparameter single-cell data

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12 December 2020

Sequential expression of pluripotency markers during direct reprogramming of mouse somatic cells

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12 December 2020

Module map of stem cell genes guides creation of epithelial cancer stem cells

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12 December 2020

An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors

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12 December 2020

FIMO: scanning for occurrences of a given motif

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12 December 2020

Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space.

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12 December 2020

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

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12 December 2020

Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming

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12 December 2020

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

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12 December 2020

The epigenetics of epithelial-mesenchymal plasticity in cancer

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12 December 2020

The effects of genetic variation on gene expression dynamics during development

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12 December 2020

Quantitative single-cell RNA-seq with unique molecular identifiers

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12 December 2020

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

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12 December 2020

Molecular mechanisms of epithelial-mesenchymal transition

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12 December 2020

Validation of noise models for single-cell transcriptomics

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12 December 2020

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

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12 December 2020

Determination and inference of eukaryotic transcription factor sequence specificity

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12 December 2020

Systems biology. Conditional density-based analysis of T cell signaling in single-cell data

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12 December 2020

Computational and analytical challenges in single-cell transcriptomics

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12 December 2020

Integrative analysis of 111 reference human epigenomes

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12 December 2020

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

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12 December 2020

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

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12 December 2020

Diffusion maps for high-dimensional single-cell analysis of differentiation data.

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12 December 2020

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

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12 December 2020

Geometry of the Gene Expression Space of Individual Cells

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12 December 2020

Distinct EMT programs control normal mammary stem cells and tumour-initiating cells

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12 December 2020

Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors

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12 December 2020

TGF-β Tumor Suppression through a Lethal EMT.

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12 December 2020

Wishbone identifies bifurcating developmental trajectories from single-cell data

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12 December 2020

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12 December 2020

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

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12 December 2020

Diffusion pseudotime robustly reconstructs lineage branching

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12 December 2020

Single-cell barcoding and sequencing using droplet microfluidics

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12 December 2020

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens

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12 December 2020

10.1016/J.CELL.2018.05.061

Identifiers

DOI

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3 April 2020

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PubMed publication ID

29961576

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