A feed-forward relay integrates the regulatory activities of Bicoid and Orthodenticle via sequential binding to suboptimal sites (Q88683599)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

title

A feed-forward relay integrates the regulatory activities of Bicoid and Orthodenticle via sequential binding to suboptimal sites (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

13

Martha L Bulyk

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

author name string

Jia Ling

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Jesse Kurland

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Xiaotong Ren

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Zhe Xu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Gozde Yucel

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Jackie Moore

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Leila Shokri

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Isabel Baker

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Timothy Bishop

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Paolo Struffi

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Rimma Levina

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Robert J Johnston

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

Stephen Small

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

language of work or name

1 reference

15 May 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

volume

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

issue

9-10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

page(s)

723-736

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

Regulation of even-skipped stripe 2 in the Drosophila embryo

26 March 2020

cites work

1 reference

12 December 2020

Direct homeodomain-DNA interaction in the autoregulation of the fushi tarazu gene

1 reference

12 December 2020

Regulation of a Segmentation Stripe by Overlapping Activators and Repressors in the Drosophila Embryo

1 reference

12 December 2020

The orthodenticle gene is regulated by bicoid and torso and specifies Drosophila head development.

1 reference

12 December 2020

The orthodenticle gene encodes a novel homeo domain protein involved in the development of the Drosophila nervous system and ocellar visual structures.

1 reference

12 December 2020

Autonomous determination of anterior structures in the early Drosophila embryo by the bicoid morphogen.

1 reference

12 December 2020

Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen.

1 reference

12 December 2020

The gradient morphogen bicoid is a concentration-dependent transcriptional activator.

1 reference

12 December 2020

A single amino acid can determine the DNA binding specificity of homeodomain proteins.

1 reference

12 December 2020

The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo

1 reference

12 December 2020

The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo.

1 reference

12 December 2020

A gradient of bicoid protein in Drosophila embryos

1 reference

12 December 2020

Specific DNA recognition and intersite spacing are critical for action of the bicoid morphogen

1 reference

12 December 2020

From fly head to mammalian forebrain: the story of otd and Otx.

1 reference

12 December 2020

Synergy between the hunchback and bicoid morphogens is required for anterior patterning in Drosophila.

1 reference

12 December 2020

The eve stripe 2 enhancer employs multiple modes of transcriptional synergy

1 reference

12 December 2020

The anterior determinant bicoid of Drosophila is a derived Hox class 3 gene

1 reference

12 December 2020

A single Hox3 gene with composite bicoid and zerknullt expression characteristics in non-Cyclorrhaphan flies

1 reference

12 December 2020

The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium.

1 reference

12 December 2020

Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

1 reference

12 December 2020

'De-evolution' of Drosophila toward a more generic mode of axis patterning.

1 reference

12 December 2020

Multiplex detection of RNA expression in Drosophila embryos

1 reference

12 December 2020

Transcriptional control in the segmentation gene network of Drosophila

1 reference

12 December 2020

The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.

1 reference

12 December 2020

Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila

1 reference

12 December 2020

Bicoid determines sharp and precise target gene expression in the Drosophila embryo

1 reference

12 December 2020

Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid

1 reference

12 December 2020

Short and long germ segmentation: unanswered questions in the evolution of a developmental mode

1 reference

12 December 2020

Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia

1 reference

12 December 2020

Site-specific transformation of Drosophila via phiC31 integrase-mediated cassette exchange

1 reference

12 December 2020

Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins

1 reference

12 December 2020

Maternal expression increases the rate of bicoid evolution by relaxing selective constraint

1 reference

12 December 2020

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

1 reference

12 December 2020

Fast sequence evolution of Hox and Hox-derived genes in the genus Drosophila

1 reference

12 December 2020

Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

1 reference

12 December 2020

Network motifs: theory and experimental approaches

1 reference

12 December 2020

The evolution of developmental gene networks: lessons from comparative studies on holometabolous insects

1 reference

12 December 2020

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

1 reference

12 December 2020

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

1 reference

12 December 2020

Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

1 reference

12 December 2020

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

1 reference

12 December 2020

Model-based analysis of ChIP-Seq (MACS)

1 reference

12 December 2020

Anterior-posterior positional information in the absence of a strong Bicoid gradient

1 reference

12 December 2020

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

1 reference

12 December 2020

MEME SUITE: tools for motif discovery and searching

1 reference

12 December 2020

Precise temporal control of the eye regulatory gene Pax6 via enhancer-binding site affinity.

1 reference

12 December 2020

Anterior development in the parthenogenetic and viviparous form of the pea aphid, Acyrthosiphon pisum: hunchback and orthodenticle expression

1 reference

12 December 2020

The time to measure positional information: maternal hunchback is required for the synchrony of the Bicoid transcriptional response at the onset of zygotic transcription.

1 reference

12 December 2020

The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA

1 reference

12 December 2020

Evolution of Gene Regulatory Networks Controlling Body Plan Development

1 reference

12 December 2020

MEME-ChIP: motif analysis of large DNA datasets

1 reference

12 December 2020

Cistrome: an integrative platform for transcriptional regulation studies

1 reference

12 December 2020

The evolutionary origin of orphan genes

1 reference

12 December 2020

Temporal coordination of gene networks by Zelda in the early Drosophila embryo.

1 reference

12 December 2020

Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins

1 reference

12 December 2020

Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity

1 reference

12 December 2020

A system of repressor gradients spatially organizes the boundaries of Bicoid-dependent target genes

1 reference

12 December 2020

Subfunctionalization via adaptive evolution influenced by genomic context: the case of histone chaperones ASF1a and ASF1b

1 reference

12 December 2020

Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease.

1 reference

12 December 2020

DNA-binding specificity changes in the evolution of forkhead transcription factors

1 reference

12 December 2020

Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution

1 reference

12 December 2020

Highly specific and efficient CRISPR/Cas9-catalyzed homology-directed repair in Drosophila

1 reference

12 December 2020

Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila

1 reference

12 December 2020

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

1 reference

12 December 2020

Low affinity binding site clusters confer hox specificity and regulatory robustness.

1 reference

12 December 2020

Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation.

1 reference

12 December 2020

Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers

1 reference

12 December 2020

Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation.

1 reference

12 December 2020

Identifiers

DOI

10.1101/GAD.311985.118

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29764918 AND SRC:MED&resulttype=core&format=json

26 March 2020

PubMed publication ID

29764918

1 reference