Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria (Q88673319)

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26 March 2020

title

Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria (English)

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26 March 2020

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Alejandro A Edera

1

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26 March 2020

Carolina L Gandini

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29761268 AND SRC:MED&resulttype=core&format=json

26 March 2020

M Virginia Sanchez-Puerta

series ordinal

3

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26 March 2020

publication date

14 May 2018

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26 March 2020

number of pages

17

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inferred from page(s)

published in

Plant Molecular Biology

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26 March 2020

volume

97

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issue

3

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26 March 2020

page(s)

215-231

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RNA editing makes mistakes in plant mitochondria: editing loses sense in transcripts of a rps19 pseudogene and in creating stop codons in coxl and rps3 mRNAs ofOenothera

26 March 2020

cites work

1 reference

12 December 2020

A sequence encoding a maturase-related protein in a group II intron of a plant mitochondrial nad1 gene

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12 December 2020

RNA editing in plant mitochondria

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12 December 2020

RNA editing in wheat mitochondria results in the conservation of protein sequences

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12 December 2020

RNA editing in plant mitochondria

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12 December 2020

Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence

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12 December 2020

A simple method for displaying the hydropathic character of a protein

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12 December 2020

Intron loss from the NADH dehydrogenase subunit 4 gene of lettuce mitochondrial DNA: evidence for homologous recombination of a cDNA intermediate

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12 December 2020

On the evolution of RNA editing

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12 December 2020

Conservation of the organization of the mitochondrial nad3 and rps12 genes in evolutionarily distant angiosperms

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12 December 2020

Effects of RNA editing and gene processing on phylogenetic reconstruction

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12 December 2020

Accelerated evolution of sites undergoing mRNA editing in plant mitochondria and chloroplasts

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12 December 2020

Editing status of mat-r transcripts in mitochondria from two plant species: C-to-U changes occur in putative functional RT and maturase domains.

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12 December 2020

The mat-r open reading frame is transcribed from a non-canonical promoter and contains an internal promoter to co-transcribe exons nad1e and nad5III in wheat mitochondria

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12 December 2020

Intracellular gene transfer in action: dual transcription and multiple silencings of nuclear and mitochondrial cox2 genes in legumes

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12 December 2020

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

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12 December 2020

The PPR motif - a TPR-related motif prevalent in plant organellar proteins

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12 December 2020

In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants

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12 December 2020

cis Recognition elements in plant mitochondrion RNA editing

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12 December 2020

Lack of conservation of editing sites in mRNAs that encode subunits of the NAD(P)H dehydrogenase complex in plastids and mitochondria of Arabidopsis thaliana

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12 December 2020

Gene transfer from mitochondrion to nucleus: novel mechanisms for gene activation from Cox2.

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12 December 2020

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

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12 December 2020

The sugar beet mitochondrial nad4 gene: an intron loss and its phylogenetic implication in the Caryophyllales

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12 December 2020

RNA editing in hornwort chloroplasts makes more than half the genes functional

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12 December 2020

In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helicase

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12 December 2020

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

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12 December 2020

Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA

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12 December 2020

The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants

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12 December 2020

An in vitro RNA editing system from cauliflower mitochondria: editing site recognition parameters can vary in different plant species

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12 December 2020

Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae

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12 December 2020

Mutation pressure and the evolution of organelle genomic architecture

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12 December 2020

The evolution of chloroplast RNA editing

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12 December 2020

Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris

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12 December 2020

Evolutionary transfers of mitochondrial genes to the nucleus in the Populus lineage and coexpression of nuclear and mitochondrial Sdh4 genes

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12 December 2020

RNA editing has been lost in the mitochondrial cox3 and rps13 mRNAs in Asparagales.

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12 December 2020

Genetic architecture of mitochondrial editing in Arabidopsis thaliana

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12 December 2020

Computational analysis of RNA editing sites in plant mitochondrial genomes reveals similar information content and a sporadic distribution of editing sites

1 reference

12 December 2020

RNA editing in plant mitochondria: assays and biochemical approaches

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12 December 2020

A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons

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12 December 2020

Modeling sites of RNA editing as a fifth nucleotide state reveals progressive loss of edited sites from angiosperm mitochondria

1 reference

12 December 2020

Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles

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12 December 2020

Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana

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12 December 2020

Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?

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12 December 2020

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

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12 December 2020

The Sequence Alignment/Map format and SAMtools

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12 December 2020

A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

1 reference

12 December 2020

Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms

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12 December 2020

Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes

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12 December 2020

RESOPS: a database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures.

1 reference

12 December 2020

Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

1 reference

12 December 2020

A pattern analysis of gene conversion literature

1 reference

12 December 2020

Mammalian recombination hot spots: properties, control and evolution.

1 reference

12 December 2020

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

1 reference

12 December 2020

Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing

1 reference

12 December 2020

Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force

1 reference

12 December 2020

Intron RNA editing is essential for splicing in plant mitochondria

1 reference

12 December 2020

Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes

1 reference

12 December 2020

Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi.

1 reference

12 December 2020

When you can’t trust the DNA: RNA editing changes transcript sequences

1 reference

12 December 2020

Are substitution rates and RNA editing correlated?

1 reference

12 December 2020

A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii

1 reference

12 December 2020

Extreme RNA Editing in Coding Islands and Abundant Microsatellites in Repeat Sequences of Selaginella moellendorffii Mitochondria: The Root of Frequent Plant mtDNA Recombination in Early Tracheophytes

1 reference

12 December 2020

The evolution of RNA editing and pentatricopeptide repeat genes.

1 reference

12 December 2020

Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

1 reference

12 December 2020

De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae).

1 reference

12 December 2020

The nucleocytoplasmic conflict, a driving force for the emergence of plant organellar RNA editing

1 reference

12 December 2020

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

1 reference

12 December 2020

A complete sequence and transcriptomic analyses of date palm (Phoenix dactylifera L.) mitochondrial genome

1 reference

12 December 2020

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

1 reference

12 December 2020

Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata

1 reference

12 December 2020

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

1 reference

12 December 2020

Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants

1 reference

12 December 2020

The genome and transcriptome of perennial ryegrass mitochondria

1 reference

12 December 2020

The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

1 reference

12 December 2020

Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues

1 reference

12 December 2020

Pentatricopeptide repeat proteins involved in plant organellar RNA editing

1 reference

12 December 2020

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors

1 reference

12 December 2020

Comprehensive High-Resolution Analysis of the Role of an Arabidopsis Gene Family in RNA Editing

1 reference

12 December 2020

Reverse transcription of spliced psbA mRNA in Chlamydomonas spp. and its possible role in evolutionary intron loss

1 reference

12 December 2020

RNA Editing in Plants and Its Evolution

1 reference

12 December 2020

Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.

1 reference

12 December 2020

Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions

1 reference

12 December 2020

RNA metabolism in plant mitochondria

1 reference

12 December 2020

Pentatricopeptide Repeat Proteins in Plants

1 reference

12 December 2020

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript.

1 reference

12 December 2020

Complete sequences of organelle genomes from the medicinal plant Rhazya stricta (Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids

1 reference

12 December 2020

Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea.

1 reference

12 December 2020

AliView: a fast and lightweight alignment viewer and editor for large datasets

1 reference

12 December 2020

The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes

1 reference

12 December 2020

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

1 reference

12 December 2020

Variable frequency of plastid RNA editing among ferns and repeated loss of uridine-to-cytidine editing from vascular plants.

1 reference

12 December 2020

Predictable alteration of sequence recognition by RNA editing factors from Arabidopsis.

1 reference

12 December 2020

Retention of functional genes for S19 ribosomal protein in both the mitochondrion and nucleus for over 60 million years

1 reference

12 December 2020

Empty pericarp7 encodes a mitochondrial E-subgroup pentatricopeptide repeat protein that is required for ccmFN editing, mitochondrial function and seed development in maize

1 reference

12 December 2020

High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora

1 reference

12 December 2020

Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns - a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles.

1 reference

12 December 2020

Localized Retroprocessing as a Model of Intron Loss in the Plant Mitochondrial Genome

1 reference

12 December 2020

The Unexpected Diversity of Plant Organelle RNA Editosomes

1 reference

12 December 2020

Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns

1 reference

12 December 2020

The Roles of Mutation, Selection, and Expression in Determining Relative Rates of Evolution in Mitochondrial versus Nuclear Genomes

1 reference

12 December 2020

Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis

1 reference

12 December 2020

Non-coding RNA may be associated with cytoplasmic male sterility in Silene vulgaris

1 reference

12 December 2020

Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses

1 reference

12 December 2020

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

1 reference

12 December 2020

Molecular Approaches for Manipulating Male Sterility and Strategies for Fertility Restoration in Plants.

1 reference

12 December 2020

Nuclear and mitochondrial RNA editing systems have opposite effects on protein diversity

1 reference

12 December 2020

Elucidating the editome: bioinformatics approaches for RNA editing detection

1 reference

12 December 2020

10.1007/S11103-018-0734-9

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29761268 AND SRC:MED&resulttype=core&format=json

26 March 2020

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