Genome architecture and global gene regulation in bacteria: making progress towards a unified model? (Q86523950)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23549066 AND SRC:MED&resulttype=core&format=json

27 February 2020

title

Genome architecture and global gene regulation in bacteria: making progress towards a unified model? (English)

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27 February 2020

1

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27 February 2020

publication date

3 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23549066 AND SRC:MED&resulttype=core&format=json

Nature Reviews Microbiology

27 February 2020

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23549066 AND SRC:MED&resulttype=core&format=json

27 February 2020

volume

11

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27 February 2020

issue

5

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27 February 2020

page(s)

349-355

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The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation

27 February 2020

cites work

1 reference

Spatial organization of the flow of genetic information in bacteria

31 March 2020

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Chromosome organization by a nucleoid-associated protein in live bacteria

31 March 2020

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Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

31 March 2020

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Physical manipulation of the Escherichia coli chromosome reveals its soft nature

31 March 2020

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Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament.

31 March 2020

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Gene clusters reflecting macrodomain structure respond to nucleoid perturbations.

31 March 2020

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Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

31 March 2020

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Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions

31 March 2020

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DNA condensation in bacteria: Interplay between macromolecular crowding and nucleoid proteins

31 March 2020

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Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

31 March 2020

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Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

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Bacterial DNA topology and infectious disease.

31 March 2020

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DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

31 March 2020

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Multidisciplinary perspectives on bacterial genome organization and dynamics

31 March 2020

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The complete genome sequence of Escherichia coli K-12

31 March 2020

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Macrodomain organization of the Escherichia coli chromosome.

31 March 2020

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Chromosome structuring limits genome plasticity in Escherichia coli.

31 March 2020

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Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria

31 March 2020

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Genetic recombination and the cell cycle: what we have learned from chromosome dimers

31 March 2020

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The Escherichia coli SMC complex, MukBEF, shapes nucleoid organization independently of DNA replication

31 March 2020

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A MatP-divisome interaction coordinates chromosome segregation with cell division in E. coli.

31 March 2020

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Long-Range Chromosome Organization in E. coli: A Site-Specific System Isolates the Ter Macrodomain

31 March 2020

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The MatP/matS site-specific system organizes the terminus region of the E. coli chromosome into a macrodomain.

31 March 2020

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Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome

31 March 2020

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Excess SeqA prolongs sequestration of oriC and delays nucleoid segregation and cell division

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SeqA: a negative modulator of replication initiation in E. coli

31 March 2020

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SeqA limits DnaA activity in replication from oriC in Escherichia coli.

31 March 2020

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Dynamic distribution of seqa protein across the chromosome of escherichia coli K-12.

31 March 2020

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A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure

31 March 2020

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Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check

31 March 2020

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Structure and properties of the bacterial nucleoid

31 March 2020

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Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling

31 March 2020

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On the structure of the folded chromosome of Escherichia coli

31 March 2020

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Topological domain structure of the Escherichia coli chromosome

31 March 2020

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Organization of supercoil domains and their reorganization by transcription

31 March 2020

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H-NS promotes looped domain formation in the bacterial chromosome

31 March 2020

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Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

31 March 2020

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ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA

31 March 2020

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Rates of gyrase supercoiling and transcription elongation control supercoil density in a bacterial chromosome

31 March 2020

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DNA supercoiling depends on the phosphorylation potential in Escherichia coli.

31 March 2020

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Supercoiling of the DNA template during transcription

31 March 2020

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DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coli

31 March 2020

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A Fundamental Regulatory Mechanism Operating through OmpR and DNA Topology Controls Expression of Salmonella Pathogenicity Islands SPI-1 and SPI-2

31 March 2020

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Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion

31 March 2020

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Location and dynamics of an active promoter in Escherichia coli K-12

31 March 2020

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GENETIC ASPECTS OF METABOLIC CONTROL.

31 March 2020

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Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

31 March 2020

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Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

31 March 2020

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Transcriptional regulation shapes the organization of genes on bacterial chromosomes

31 March 2020

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A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation

31 March 2020

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Periodic transcriptional organization of the E.coli genome

31 March 2020

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Genomic Organization of Evolutionarily Correlated Genes in Bacteria: Limits and Strategies

31 March 2020

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Chromosomal periodicity of evolutionarily conserved gene pairs

31 March 2020

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Caulobacter chromosome in vivo configuration matches model predictions for a supercoiled polymer in a cell-like confinement

31 March 2020

1 reference

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

31 March 2020

1 reference

Chromosomal periodicity and positional networks of genes in Escherichia coli

31 March 2020

1 reference

Spatial organization of a replicating bacterial chromosome

31 March 2020

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How Salmonella became a pathogen

31 March 2020

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The terminal region of the E. coli chromosome localises at the periphery of the nucleoid.

31 March 2020

1 reference

Nucleoid restructuring in stationary-state bacteria

31 March 2020

1 reference

Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy

31 March 2020

1 reference

The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective.

31 March 2020

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Regulatory design governing progression of population growth phases in bacteria

31 March 2020

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Gene amplification and adaptive evolution in bacteria.

31 March 2020

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Evolutionary implications of horizontal gene transfer

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23549066

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Electron microscope study of DNA-containing plasms. II. Vegetative and mature phage DNA as compared with normal bacterial nucleoids in different physiological states

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23549066