RNase HII Saves rnhA Mutant Escherichia coli from R-Loop-Associated Chromosomal Fragmentation (Q64389775)

Journal of Molecular Biology

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published in

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volume

429

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issue

19

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page(s)

2873-2894

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cites work

Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

1 reference

12 December 2020

R-loop-dependent hypernegative supercoiling in Escherichia coli topA mutants preferentially occurs at low temperatures and correlates with growth inhibition

1 reference

12 December 2020

Out of balance: R-loops in human disease

1 reference

12 December 2020

Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing a single ribonucleotide at the DNA-RNA junction with prokaryotic RNases HII

1 reference

12 December 2020

The Consequences of Replicating in the Wrong Orientation: Bacterial Chromosome Duplication without an Active Replication Origin

1 reference

12 December 2020

The homologous recombination machinery modulates the formation of RNA-DNA hybrids and associated chromosome instability.

1 reference

12 December 2020

Kinetic characteristics of Escherichia coli RNase H1: cleavage of various antisense oligonucleotide-RNA duplexes

1 reference

12 December 2020

Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells

1 reference

12 December 2020

The precarious prokaryotic chromosome

1 reference

12 December 2020

Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli

1 reference

12 December 2020

Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts

1 reference

12 December 2020

Junction ribonuclease activity specified in RNases HII/2

1 reference

12 December 2020

Topoisomerase I-mediated cleavage at unrepaired ribonucleotides generates DNA double-strand breaks

1 reference

12 December 2020

Isolation and characterization of a second RNase H (RNase HII) of Escherichia coli K-12 encoded by the rnhB gene

1 reference

12 December 2020

Molecular diversities of RNases H.

1 reference

12 December 2020

Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli

1 reference

12 December 2020

Cost of rNTP/dNTP pool imbalance at the replication fork

1 reference

12 December 2020

Junction ribonuclease: a ribonuclease HII orthologue from Thermus thermophilus HB8 prefers the RNA-DNA junction to the RNA/DNA heteroduplex

1 reference

12 December 2020

Regulation of bacterial priming and daughter strand synthesis through helicase-primase interactions

1 reference

12 December 2020

Identification of additional genes belonging to the LexA regulon in Escherichia coli

1 reference

12 December 2020

A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet

1 reference

12 December 2020

RNase HI overproduction is required for efficient full-length RNA synthesis in the absence of topoisomerase I in Escherichia coli

1 reference

12 December 2020

Ribonuclease H: the enzymes in eukaryotes

1 reference

12 December 2020

Isolation of RNase H genes that are essential for growth of Bacillus subtilis 168

1 reference

12 December 2020

Ribonucleotides in bacterial DNA

1 reference

12 December 2020

RecA-dependent mutants in Escherichia coli reveal strategies to avoid chromosomal fragmentation.

1 reference

12 December 2020

Mutations in uvrD induce the SOS response in Escherichia coli

1 reference

12 December 2020

ColE1-type vectors with fully repressible replication

1 reference

12 December 2020

Evidence of RNA in D loops of intracellular lambda DNA

1 reference

12 December 2020

Transcription and replication of mitochondrial DNA.

1 reference

12 December 2020

A combination of RNase H (rnh) and recBCD or sbcB mutations in Escherichia coli K 12 adversely affects growth

1 reference

12 December 2020

Fragmentation of replicating chromosomes triggered by uracil in DNA.

1 reference

12 December 2020

Characterization of nucleotide pools as a function of physiological state in Escherichia coli

1 reference

12 December 2020

Conformational influence of the ribose 2'-hydroxyl group: Crystal structures of DNA-RNA chimeric duplexes

1 reference

12 December 2020

Study of plasmid replication in Escherichia coli with a combination of 2D gel electrophoresis and electron microscopy.

1 reference

12 December 2020

R loop mapping of the 18S and 28S sequences in the long and short repeating units of drosophila melanogaster rDNA

1 reference

12 December 2020

RNA-templated DNA repair

1 reference

12 December 2020

Regulation of chromosome replication in Escherichia coli: a comparison of the effects of phenethyl alcohol treatment with those of amino acid starvation

1 reference

12 December 2020

Error-Prone and Error-Restrictive Mutations Affecting Ribosomal Protein S12

1 reference

12 December 2020

Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development.

1 reference

12 December 2020

Removal of misincorporated ribonucleotides from prokaryotic genomes: an unexpected role for nucleotide excision repair

1 reference

12 December 2020

Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability

1 reference

12 December 2020

RNase H2 roles in genome integrity revealed by unlinking its activities

1 reference

12 December 2020

Hybridization of RNA to double-stranded DNA: formation of R-loops

1 reference

12 December 2020

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

1 reference

12 December 2020

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription

1 reference

12 December 2020

The Yin and Yang of R-loop biology

1 reference

12 December 2020

D-loops and R-loops: alternative mechanisms for the initiation of chromosome replication in Escherichia coli

1 reference

12 December 2020

RNase H and Multiple RNA Biogenesis Factors Cooperate to Prevent RNA:DNA Hybrids from Generating Genome Instability

1 reference

12 December 2020

Rifampicin Inhibition of Ribonucleic Acid and Protein Synthesis in Normal and Ethylenediaminetetraacetic Acid-Treated Escherichia coli

1 reference

12 December 2020

Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda

1 reference

12 December 2020

Requirement of homologous recombination functions for viability of the Escherichia coli cell that lacks RNase HI and exonuclease V activities.

1 reference

12 December 2020

ColE1 replication control circuitry: sense from antisense

1 reference

12 December 2020

Replication of the Escherichia coli chromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics.

1 reference

12 December 2020

Mechanistic aspects of promoter binding and chain initiation by RNA polymerase

1 reference

12 December 2020

Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases

1 reference

12 December 2020

Physiological concentrations of purines and pyrimidines

1 reference

12 December 2020

The replisome uses mRNA as a primer after colliding with RNA polymerase

1 reference

12 December 2020

Production of clastogenic DNA precursors by the nucleotide metabolism in Escherichia coli.

1 reference

12 December 2020

Host factor titration by chromosomal R-loops as a mechanism for runaway plasmid replication in transcription termination-defective mutants of Escherichia coli

1 reference

12 December 2020

Slowing bacterial translation speed enhances eukaryotic protein folding efficiency

1 reference

12 December 2020

Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system.

1 reference

12 December 2020

The DinG protein from Escherichia coli is a structure-specific helicase.

1 reference

12 December 2020

Elevated Genome-Wide Instability in Yeast Mutants Lacking RNase H Activity

1 reference

12 December 2020

Specificity mechanisms in the control of transcription

1 reference

12 December 2020

RNase H enables efficient repair of R-loop induced DNA damage

1 reference

12 December 2020

Eukaryotic ribonucleases HI and HII generate characteristic hydrolytic patterns on DNA-RNA hybrids: further evidence that mitochondrial RNase H is an RNase HII.

1 reference

12 December 2020

R loops: new modulators of genome dynamics and function

1 reference

12 December 2020

Stable DNA replication: interplay between DNA replication, homologous recombination, and transcription

1 reference

12 December 2020

Complete analysis of cellular nucleotides by two-dimensional thin layer chromatography

1 reference

12 December 2020

Rho-dependent transcription termination is essential to prevent excessive genome-wide R-loops in Escherichia coli

1 reference

12 December 2020

Characterization of ribonuclease HII from Escherichia coli overproduced in a soluble form

1 reference

12 December 2020

Multiple origin usage for DNA replication in sdrA(rnh) mutants of Escherichia coli K-12. Initiation in the absence of oriC

1 reference

12 December 2020

Structure-function analysis of ribonucleotide bypass by B family DNA replicases

1 reference

12 December 2020

Breaking bad: R-loops and genome integrity

1 reference

12 December 2020

Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases

1 reference

12 December 2020

The replicative helicases of bacteria, archaea, and eukarya can unwind RNA-DNA hybrid substrates.

1 reference

12 December 2020

Chi sites in combination with RecA protein increase the survival of linear DNA in Escherichia coli by inactivating exoV activity of RecBCD nuclease

1 reference

12 December 2020

Causes and consequences of ribonucleotide incorporation into nuclear DNA.

1 reference

12 December 2020

Replication of ribonucleotide-containing DNA templates by yeast replicative polymerases

1 reference

12 December 2020

R-loop-mediated genomic instability is caused by impairment of replication fork progression

1 reference

12 December 2020

The RecG branch migration protein of Escherichia coli dissociates R-loops.

1 reference

12 December 2020

Overexpression of RNase H partially complements the growth defect of an Escherichia coli delta topA mutant: R-loop formation is a major problem in the absence of DNA topoisomerase I

1 reference

12 December 2020

Reassessment of the in vivo functions of DNA polymerase I and RNase H in bacterial cell growth

1 reference

12 December 2020

Interactions between deoxyribonucleotide and DNA synthesis

1 reference

12 December 2020

17 A rapid alkaline extraction method for the isolation of plasmid DNA

1 reference

12 December 2020

Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes

1 reference

12 December 2020

Multiple mechanisms for initiation of ColE1 DNA replication: DNA synthesis in the presence and absence of ribonuclease H

1 reference

12 December 2020

Action of nucleases on double-stranded RNA.

1 reference

12 December 2020

Ribonucleotide incorporation, proofreading and bypass by human DNA polymerase δ

1 reference

12 December 2020

Oxazolidinone resistance mutations in 23S rRNA of Escherichia coli reveal the central region of domain V as the primary site of drug action.

1 reference

12 December 2020

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

1 reference

12 December 2020

DNA double-strand breaks caused by replication arrest

1 reference

12 December 2020

ATP-dependent resolution of R-loops at the ColE1 replication origin by Escherichia coli RecG protein, a Holliday junction-specific helicase

1 reference

12 December 2020

Ribonucleotides in DNA: Origins, repair and consequences

1 reference

12 December 2020

Static and Dynamic Factors Limit Chromosomal Replication Complexity in Escherichia coli, Avoiding Dangers of Runaway Overreplication

1 reference

12 December 2020

Kinetic analysis of Escherichia coli RNase H using DNA-RNA-DNA/DNA substrates

1 reference

12 December 2020

Solution Structure of the Dickerson DNA Dodecamer Containing a Single Ribonucleotide

1 reference

12 December 2020