Analyzing the Dynamics of Single TBP-DNA-NC2 Complexes Using Hidden Markov Models (Q64375974)

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13 April 2020

title

Analyzing the Dynamics of Single TBP-DNA-NC2 Complexes Using Hidden Markov Models (English)

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5

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author name string

Nawid Zarrabi

1

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13 April 2020

Peter Schluesche

2

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13 April 2020

Michael Meisterernst

3

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13 April 2020

Michael Börsch

4

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language of work or name

English

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publication date

17 November 2018

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volume

115

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issue

12

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page(s)

2310-2326

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Transcription factor TFIID induces DNA bending upon binding to the TATA element.

13 April 2020

cites work

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12 December 2020

Family of proteins that interact with TFIID and regulate promoter activity

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12 December 2020

1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG

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12 December 2020

Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone H3 in repressing transcription in vivo

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Crystal structure of a yeast TBP/TATA-box complex

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12 December 2020

Co-crystal structure of TBP recognizing the minor groove of a TATA element

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12 December 2020

Intercalation, DNA kinking, and the control of transcription.

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12 December 2020

Crystal structure of a human TATA box-binding protein/TATA element complex

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12 December 2020

The TATA box binding protein.

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12 December 2020

The role of general initiation factors in transcription by RNA polymerase II

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12 December 2020

The human general co-factors

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12 December 2020

RNA polymerase II transcription initiation: a structural view

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12 December 2020

Functional antagonism between RNA polymerase II holoenzyme and global negative regulator NC2 in vivo

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12 December 2020

A single point mutation in TFIIA suppresses NC2 requirement in vivo

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12 December 2020

Binding mechanisms of TATA box-binding proteins: DNA kinking is stabilized by specific hydrogen bonds

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12 December 2020

Yeast NC2 associates with the RNA polymerase II preinitiation complex and selectively affects transcription in vivo

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12 December 2020

Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex

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12 December 2020

Fluorescence-based analyses of the effects of full-length recombinant TAF130p on the interaction of TATA box-binding protein with TATA box DNA.

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12 December 2020

Stepwise rotation of the gamma-subunit of EF(0)F(1)-ATP synthase observed by intramolecular single-molecule fluorescence resonance energy transfer

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12 December 2020

Interplay of TBP inhibitors in global transcriptional control

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12 December 2020

Inhibition of excess nodal signaling during mouse gastrulation by the transcriptional corepressor DRAP1

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12 December 2020

High-affinity DNA binding by a Mot1p-TBP complex: implications for TAF-independent transcription

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12 December 2020

Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes

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12 December 2020

Proton-powered subunit rotation in single membrane-bound F0F1-ATP synthase.

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12 December 2020

Recent highlights of RNA-polymerase-II-mediated transcription

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12 December 2020

NC2alpha interacts with BTAF1 and stimulates its ATP-dependent association with TATA-binding protein

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12 December 2020

Theory of photon statistics in single-molecule Förster resonance energy transfer

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12 December 2020

Transcriptional regulation and the role of diverse coactivators in animal cells

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12 December 2020

Movements of the epsilon-subunit during catalysis and activation in single membrane-bound H( )-ATP synthase

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12 December 2020

Alternating-laser excitation of single molecules

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12 December 2020

Subunit movement in individual H -ATP synthases during ATP synthesis and hydrolysis revealed by fluorescence resonance energy transfer.

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12 December 2020

Analysis of single-molecule FRET trajectories using hidden Markov modeling

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12 December 2020

Hidden Markov model analysis of multichromophore photobleaching.

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12 December 2020

Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments

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12 December 2020

NC2 mobilizes TBP on core promoter TATA boxes.

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12 December 2020

The proton-translocating a subunit of F0F1-ATP synthase is allocated asymmetrically to the peripheral stalk

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12 December 2020

The dynamic personality of TATA-binding protein

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12 December 2020

COCIS: Markov processes in single molecule fluorescence.

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12 December 2020

Direct Determination of Kinetic Rates from Single-Molecule Photon Arrival Trajectories Using Hidden Markov Models.

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12 December 2020

Extracting kinetics information from single-molecule fluorescence resonance energy transfer data using hidden markov models

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12 December 2020

36 degrees step size of proton-driven c-ring rotation in FoF1-ATP synthase

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12 December 2020

Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data

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12 December 2020

Denoising single-molecule FRET trajectories with wavelets and Bayesian inference

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12 December 2020

A comparative study of multivariate and univariate hidden Markov modelings in time-binned single-molecule FRET data analysis

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12 December 2020

Graphical models for inferring single molecule dynamics

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12 December 2020

Improved temporal resolution and linked hidden Markov modeling for switchable single-molecule FRET.

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12 December 2020

Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein

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12 December 2020

Single Molecule Analysis Research Tool (SMART): an integrated approach for analyzing single molecule data

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12 December 2020

Variational Bayes analysis of a photon-based hidden Markov model for single-molecule FRET trajectories

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12 December 2020

A stochastic model for electron multiplication charge-coupled devices--from theory to practice

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12 December 2020

Analyzing conformational dynamics of single P-glycoprotein transporters by Förster resonance energy transfer using hidden Markov models

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12 December 2020

Empirical Bayes methods enable advanced population-level analyses of single-molecule FRET experiments

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12 December 2020

Single-Molecule Analysis beyond Dwell Times: Demonstration and Assessment in and out of Equilibrium

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12 December 2020

Simulations of camera-based single-molecule fluorescence experiments

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12 December 2020

10.1016/J.BPJ.2018.11.015

Identifiers

DOI

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13 April 2020

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13 April 2020

PubMed publication ID

30527334

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