Diploid Genome Assembly of the Wine Grape Carménère (Q64107199)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

title

Diploid Genome Assembly of the Wine Grape Carménère (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

genomic structural variation

1 May 2020

main subject

genome assembly

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author

Andrea Minio

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

Mélanie Massonnet

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

Rosa Figueroa-Balderas

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

Alvaro Castro

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

Dario Cantu

5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

author name string

Andrea Minio

1

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Mélanie Massonnet

2

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Rosa Figueroa-Balderas

3

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Alvaro Castro

4

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Dario Cantu

5

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language of work or name

English

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publication date

7 May 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

volume

9

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1 May 2020

issue

5

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1 May 2020

page(s)

1331-1337

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

describes a project that uses

1 May 2020

MUMmer

object named as

MUMMER

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

12 December 2020

The parentage of a classic wine grape, Cabernet Sauvignon

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12 December 2020

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12 December 2020

Nucleotide binding site/leucine-rich repeats, Pto-like and receptor-like kinases related to disease resistance in grapevine

1 reference

12 December 2020

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

1 reference

12 December 2020

Gene finding in novel genomes

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12 December 2020

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders

1 reference

12 December 2020

Vitis vinifera terpenoid cyclases: functional identification of two sesquiterpene synthase cDNAs encoding ( )-valencene synthase and (-)-germacrene D synthase and expression of mono- and sesquiterpene synthases in grapevine flowers and berries

1 reference

12 December 2020

Development of a standard set of microsatellite reference alleles for identification of grape cultivars.

1 reference

12 December 2020

Automated generation of heuristics for biological sequence comparison

1 reference

12 December 2020

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

1 reference

12 December 2020

Gene identification in novel eukaryotic genomes by self-training algorithm

1 reference

12 December 2020

AUGUSTUS: ab initio prediction of alternative transcripts

1 reference

12 December 2020

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

1 reference

12 December 2020

The monosaccharide transporter(-like) gene family in Arabidopsis

1 reference

12 December 2020

Characterization of Vitis vinifera L. Cv. Carménère grape and wine proanthocyanidins

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12 December 2020

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

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12 December 2020

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

1 reference

12 December 2020

Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides

1 reference

12 December 2020

Receptor-like proteins involved in plant disease resistance

1 reference

12 December 2020

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

1 reference

12 December 2020

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

1 reference

12 December 2020

De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

1 reference

12 December 2020

Genetic analysis of the biosynthesis of 2-methoxy-3-isobutylpyrazine, a major grape-derived aroma compound impacting wine quality

1 reference

12 December 2020

A methyltransferase essential for the methoxypyrazine-derived flavour of wine

1 reference

12 December 2020

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

1 reference

12 December 2020

The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome.

1 reference

12 December 2020

InterProScan 5: genome-scale protein function classification

1 reference

12 December 2020

PBHoney: identifying genomic variants via long-read discordance and interrupted mapping

1 reference

12 December 2020

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

1 reference

12 December 2020

LoRDEC: accurate and efficient long read error correction.

1 reference

12 December 2020

Polyols in grape berry: transport and metabolic adjustments as a physiological strategy for water-deficit stress tolerance in grapevine

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12 December 2020

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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12 December 2020

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

1 reference

12 December 2020

Phased diploid genome assembly with single-molecule real-time sequencing.

1 reference

12 December 2020

How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes

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12 December 2020

Polyphenols of Carménère Grapes

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12 December 2020

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3).

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12 December 2020

Whole-genome sequencing and SNV genotyping of 'Nebbiolo' (Vitis vinifera L.) clones.

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12 December 2020

MUMmer4: A fast and versatile genome alignment system

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12 December 2020

Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development

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12 December 2020

Identifiers

DOI

10.1534/G3.119.400030

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30923135 AND SRC:MED&resulttype=core&format=json

1 May 2020

PubMed publication ID

30923135

1 reference