Ancient Transcription Factors in the News (Q64102109)

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25 April 2020

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19 January 2021

Ancient Transcription Factors in the News (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30808693 AND SRC:MED&resulttype=core&format=json

regulation of gene expression

25 April 2020

main subject

antitermination

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8 September 2019

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12 October 2019

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22 December 2019

22 December 2020

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19 January 2021

1

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25 April 2020

Stefan H Knauer

series ordinal

2

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25 April 2020

author name string

Irina Artsimovitch

series ordinal

1

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Stefan H Knauer

series ordinal

2

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language of work or name

English

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publication date

26 February 2019

6 references

8 September 2019

12 October 2019

22 December 2019

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25 April 2020

22 December 2020

19 January 2021

6 references

8 September 2019

12 October 2019

22 December 2019

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25 April 2020

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25 April 2020

issue

1

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Creative Commons Attribution 4.0 International

25 April 2020

copyright license

5 references

8 September 2019

12 October 2019

22 December 2019

22 December 2020

Effect of Escherichia coli nusG function on lambda N-mediated transcription antitermination

19 January 2021

cites work

1 reference

12 December 2020

NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage lambda

1 reference

12 December 2020

Requirement for E. coli NusG protein in factor-dependent transcription termination

1 reference

12 December 2020

Assembly of transcription elongation complexes containing the N protein of phage lambda and the Escherichia coli elongation factors NusA, NusB, NusG, and S10

1 reference

12 December 2020

Preventing the synthesis of unused transcripts by Rho factor

1 reference

12 December 2020

Expression of the E.coli hemolysin secretion gene hlyB involves transcript anti-termination within the hly operon

1 reference

12 December 2020

Role of the ribosome in suppressing transcriptional termination at the pyrBI attenuator of Escherichia coli K-12.

1 reference

12 December 2020

Translation activates the paused transcription complex and restores transcription of the trp operon leader region

1 reference

12 December 2020

Visualization of Bacterial Genes in Action

1 reference

12 December 2020

Gene rfaH, which affects lipopolysaccharide core structure in Salmonella typhimurium, is required also for expression of F-factor functions

1 reference

12 December 2020

Transcription antitermination by bacteriophage lambda N gene product

1 reference

12 December 2020

sfrA and sfrB products of Escherichia coli K-12 are transcriptional control factors

1 reference

12 December 2020

NusG alters rho-dependent termination of transcription in vitro independent of kinetic coupling.

1 reference

12 December 2020

Phage HK022 Nun protein arrests transcription on phage lambda DNA in vitro and competes with the phage lambda N antitermination protein.

1 reference

12 December 2020

Ribosomal RNA antitermination in vitro: requirement for Nus factors and one or more unidentified cellular components.

1 reference

12 December 2020

Bacteriophage lambda N protein alone can induce transcription antitermination in vitro

1 reference

12 December 2020

Interaction between the phage HK022 Nun protein and the nut RNA of phage lambda

1 reference

12 December 2020

KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins

1 reference

12 December 2020

Enhancing transcription through the Escherichia coli hemolysin operon, hlyCABD: RfaH and upstream JUMPStart DNA sequences function together via a postinitiation mechanism

1 reference

12 December 2020

Genes involved in conjugative DNA processing of plasmid R6K

1 reference

12 December 2020

RfaH and the ops element, components of a novel system controlling bacterial transcription elongation

1 reference

12 December 2020

Escherichia coli NusA is required for efficient RNA binding by phage HK022 Nun protein

1 reference

12 December 2020

Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision

1 reference

12 December 2020

A NusG-like transcription anti-terminator is involved in the biosynthesis of the polyketide antibiotic TA of Myxococcus xanthus

1 reference

12 December 2020

Activation of Rho-dependent transcription termination by NusG. Dependence on terminator location and acceleration of RNA release

1 reference

12 December 2020

Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis.

1 reference

12 December 2020

Escherichia coli nusG mutations that block transcription termination by coliphage HK022 Nun protein

1 reference

12 December 2020

Regulation of rho-dependent transcription termination by NusG is specific to the Escherichia coli elongation complex

1 reference

12 December 2020

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

1 reference

12 December 2020

Three-dimensional structure of the Tn5 synaptic complex transposition intermediate

1 reference

12 December 2020

Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination.

1 reference

12 December 2020

Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli

1 reference

12 December 2020

Control of intrinsic transcription termination by N and NusA: the basic mechanisms

1 reference

12 December 2020

The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

1 reference

12 December 2020

Loss of regulatory protein RfaH attenuates virulence of uropathogenic Escherichia coli.

1 reference

12 December 2020

Novel domains and orthologues of eukaryotic transcription elongation factors.

1 reference

12 December 2020

An Escherichia coli MG1655 lipopolysaccharide deep-rough core mutant grows and survives in mouse cecal mucus but fails to colonize the mouse large intestine

1 reference

12 December 2020

In vivo effect of NusB and NusG on rRNA transcription antitermination

1 reference

12 December 2020

Highly divergent RfaH orthologs from pathogenic proteobacteria can substitute for Escherichia coli RfaH both in vivo and in vitro

1 reference

12 December 2020

The transcriptional antiterminator RfaH represses biofilm formation in Escherichia coli.

1 reference

12 December 2020

Down-regulation of key virulence factors makes the Salmonella enterica serovar Typhimurium rfaH mutant a promising live-attenuated vaccine candidate

1 reference

12 December 2020

Isolation and characterization of the Serratia entomophila antifeeding prophage

1 reference

12 December 2020

Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator

1 reference

12 December 2020

Allosteric control of the RNA polymerase by the elongation factor RfaH

1 reference

12 December 2020

The elongation factor RfaH and the initiation factor sigma bind to the same site on the transcription elongation complex

1 reference

12 December 2020

Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader

1 reference

12 December 2020

In vitro approaches to analysis of transcription termination

1 reference

12 December 2020

Functional specialization of transcription elongation factors

1 reference

12 December 2020

Damage detection and base flipping in direct DNA alkylation repair

1 reference

12 December 2020

Regulator trafficking on bacterial transcription units in vivo

1 reference

12 December 2020

RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family.

1 reference

12 December 2020

Two Structurally Independent Domains of E. coli NusG Create Regulatory Plasticity via Distinct Interactions with RNA Polymerase and Regulators

1 reference

12 December 2020

Rho directs widespread termination of intragenic and stable RNA transcription.

1 reference

12 December 2020

A family of transcriptional antitermination factors necessary for synthesis of the capsular polysaccharides of Bacteroides fragilis

1 reference

12 December 2020

Molecular evolution of multisubunit RNA polymerases: structural analysis

1 reference

12 December 2020

Functional regions of the N-terminal domain of the antiterminator RfaH.

1 reference

12 December 2020

Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif

1 reference

12 December 2020

E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase

1 reference

12 December 2020

A NusE:NusG complex links transcription and translation

1 reference

12 December 2020

Cooperation between translating ribosomes and RNA polymerase in transcription elongation

1 reference

12 December 2020

The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase

1 reference

12 December 2020

Uniform transitions of the general RNA polymerase II transcription complex

1 reference

12 December 2020

Evolution of multisubunit RNA polymerases in the three domains of life.

1 reference

12 December 2020

Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity

1 reference

12 December 2020

The β Subunit Gate Loop Is Required for RNA Polymerase Modification by RfaH and NusG

1 reference

12 December 2020

The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

1 reference

12 December 2020

A nexus for gene expression-molecular mechanisms of Spt5 and NusG in the three domains of life

1 reference

12 December 2020

Duplex interrogation by a direct DNA repair protein in search of base damage

1 reference

12 December 2020

An α Helix to β Barrel Domain Switch Transforms the Transcription Factor RfaH into a Translation Factor

1 reference

12 December 2020

Structural basis of transcription initiation

1 reference

12 December 2020

1 reference

12 December 2020

Complete nucleotide sequences of blaKPC-4- and blaKPC-5-harboring IncN and IncX plasmids from Klebsiella pneumoniae strains isolated in New Jersey

1 reference

12 December 2020

Rho and NusG suppress pervasive antisense transcription in Escherichia coli

1 reference

12 December 2020

Specific contacts between protein S4 and ribosomal RNA are required at multiple stages of ribosome assembly

1 reference

12 December 2020

RNA polymerase and the ribosome: the close relationship

1 reference

12 December 2020

F conjugation: back to the beginning

1 reference

12 December 2020

The Escherichia coli translation-associated heat shock protein YbeY is involved in rRNA transcription antitermination

1 reference

12 December 2020

Interdomain contacts control folding of transcription factor RfaH.

1 reference

12 December 2020

Antisense oligonucleotide-stimulated transcriptional pausing reveals RNA exit channel specificity of RNA polymerase and mechanistic contributions of NusA and RfaH.

1 reference

12 December 2020

NusG/Spt5: are there common functions of this ubiquitous transcription elongation factor?

1 reference

12 December 2020

A pause sequence enriched at translation start sites drives transcription dynamics in vivo

1 reference

12 December 2020

Coliphage HK022 Nun protein inhibits RNA polymerase translocation

1 reference

12 December 2020

Interactions between RNA polymerase and the "core recognition element" counteract pausing

1 reference

12 December 2020

Bacterial sigma factors: a historical, structural, and genomic perspective

1 reference

12 December 2020

Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms

1 reference

12 December 2020

Molecular dynamics study on folding and allostery in RfaH.

1 reference

12 December 2020

Genome-Wide Identification of Klebsiella pneumoniae Fitness Genes during Lung Infection

1 reference

12 December 2020

Interdomain Contacts Control Native State Switching of RfaH on a Dual-Funneled Landscape

1 reference

12 December 2020

Structure of a bacterial RNA polymerase holoenzyme open promoter complex

1 reference

12 December 2020

The Role of the Interdomain Interactions on RfaH Dynamics and Conformational Transformation

1 reference

12 December 2020

Mechanism of the All-α to All-β Conformational Transition of RfaH-CTD: Molecular Dynamics Simulation and Markov State Model

1 reference

12 December 2020

The quantitative and condition-dependent Escherichia coli proteome

1 reference

12 December 2020

Bacterial RNA polymerase can retain σ70 throughout transcription.

1 reference

12 December 2020

NusG Is a Sequence-specific RNA Polymerase Pause Factor That Binds to the Non-template DNA within the Paused Transcription Bubble

1 reference

12 December 2020

Transcription Elongation Factor NusA Is a General Antagonist of Rho-dependent Termination in Escherichia coli

1 reference

12 December 2020

Biochemical Analysis of Yeast Suppressor of Ty 4/5 (Spt4/5) Reveals the Importance of Nucleic Acid Interactions in the Prevention of RNA Polymerase II Arrest

1 reference

12 December 2020

SuhB Associates with Nus Factors To Facilitate 30S Ribosome Biogenesis in Escherichia coli

1 reference

12 December 2020

Mechanisms of Bacterial Transcription Termination: All Good Things Must End.

1 reference

12 December 2020

Molecular Basis of NusG-mediated Regulation of Rho-dependent Transcription Termination in Bacteria

1 reference

12 December 2020

NusG inhibits RNA polymerase backtracking by stabilizing the minimal transcription bubble

1 reference

12 December 2020

Thermotoga maritima NusG: domain interaction mediates autoinhibition and thermostability

1 reference

12 December 2020

RNA polymerase gate loop guides the nontemplate DNA strand in transcription complexes.

1 reference

12 December 2020

A meiosis-specific Spt5 homolog involved in non-coding transcription

1 reference

12 December 2020

LoaP is a broadly conserved antiterminator protein that regulates antibiotic gene clusters in Bacillus amyloliquefaciens

1 reference

12 December 2020

Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex.

1 reference

12 December 2020

Architecture of a transcribing-translating expressome

1 reference

12 December 2020

Structural basis for λN-dependent processive transcription antitermination

1 reference

12 December 2020

A Screen for rfaH Suppressors Reveals a Key Role for a Connector Region of Termination Factor Rho.

1 reference

12 December 2020

Flipping states: a few key residues decide the winning conformation of the only universally conserved transcription factor

1 reference

12 December 2020

Rho Protein: Roles and Mechanisms

1 reference

12 December 2020

Structure of the complete elongation complex of RNA polymerase II with basal factors.

1 reference

12 December 2020

Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp

1 reference

12 December 2020

Transcription-translation coupling: direct interactions of RNA polymerase with ribosomes and ribosomal subunits.

1 reference

12 December 2020

Structure of RNA polymerase bound to ribosomal 30S subunit

1 reference

12 December 2020

RNA Polymerase Accommodates a Pause RNA Hairpin by Global Conformational Rearrangements that Prolong Pausing.

1 reference

12 December 2020

Structural Basis for NusA Stabilized Transcriptional Pausing.

1 reference

12 December 2020

Escherichia coli transcription factor NusG binds to 70S ribosomes.

1 reference

12 December 2020

Rebuilding the bridge between transcription and translation

1 reference

12 December 2020

The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand.

1 reference

12 December 2020

Locking the nontemplate DNA to control transcription

1 reference

12 December 2020

Structural Basis for Transcript Elongation Control by NusG Family Universal Regulators

1 reference

12 December 2020

Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein

1 reference

12 December 2020

Structure of activated transcription complex Pol II–DSIF–PAF–SPT6

1 reference

12 December 2020

Structure of paused transcription complex Pol II-DSIF-NELF

1 reference

12 December 2020

Measures of single- versus multiple-round translation argue against a mechanism to ensure coupling of transcription and translation

1 reference

12 December 2020

Reversible fold-switching controls the functional cycle of the antitermination factor RfaH

1 reference

12 December 2020

Identifiers

DOI

10.1128/MBIO.01547-18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30808693 AND SRC:MED&resulttype=core&format=json

25 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30808693 AND SRC:MED&resulttype=core&format=json

25 April 2020

PubMed publication ID

30808693

1 reference