Analysis by RNA-seq of transcriptomic changes elicited by heat shock in Leishmania major (Q64066199)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

title

Analysis by RNA-seq of transcriptomic changes elicited by heat shock in Leishmania major (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

1 reference

1 reference

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

José María Requena

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

author name string

Laura Corvo

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

Rodrigo Lombraña

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

Jose C Solana

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

Begoña Aguado

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

language of work or name

English

0 references

publication date

6 May 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

official website

https://rdcu.be/bAv1b

language of work or name

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

page(s)

6919

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

24 April 2020

copyright license

start time

6 May 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

1 reference

Controlling gene expression in response to stress.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

In vitro cultivation and characterization of axenic amastigotes of Leishmania

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Differentiation of Leishmania donovani in host-free system: analysis of signal perception and response.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The role of pH and temperature in the development of Leishmania parasites

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A touch of Zen: post-translational regulation of the Leishmania stress response.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Post-transcriptional regulation of gene expression in trypanosomes and leishmanias

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Posttranscriptional control and the role of RNA‐binding proteins in gene regulation in trypanosomatid protozoan parasites

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Lights and shadows on gene organization and regulation of gene expression in Leishmania

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The genome of the kinetoplastid parasite, Leishmania major

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Histone acetylations mark origins of polycistronic transcription in Leishmania major

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

trans and cis splicing in trypanosomatids: mechanism, factors, and regulation

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A regulatory role for the 5' and 3' untranslated regions in differential expression of hsp83 in Leishmania

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

High constitutive levels of heat-shock proteins in human-pathogenic parasites of the genus Leishmania

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Analysis of post-transcriptional regulation operating on transcription products of the tandemly linked Leishmania infantum hsp70 genes

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The expression of HSP83 genes in Leishmania infantum is affected by temperature and by stage-differentiation and is regulated at the levels of mRNA stability and translation

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The translational efficiencies of the two Leishmania infantum HSP70 mRNAs, differing in their 3'-untranslated regions, are affected by shifts in the temperature of growth through different mechanisms

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Preferential translation of Hsp83 in Leishmania requires a thermosensitive polypyrimidine-rich element in the 3' UTR and involves scanning of the 5' UTR

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantum

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Temperature increase prevails over acidification in gene expression modulation of amastigote differentiation in Leishmania infantum

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genome-wide gene expression profile induced by exposure to cadmium acetate in Leishmania infantum promastigotes

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genome-wide analysis reveals increased levels of transcripts related with infectivity in peanut lectin non-agglutinated promastigotes of Leishmania infantum.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Comparative expression profiling of Leishmania: modulation in gene expression between species and in different host genetic backgrounds

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Expression profiling of the Leishmania life cycle: cDNA arrays identify developmentally regulated genes present but not annotated in the genome

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Translational control through eIF2alpha phosphorylation during the Leishmania differentiation process

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A postgenomic view of the heat shock proteins in kinetoplastids

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Resequencing and assembly of seven complex loci to improve the Leishmania major (Friedlin strain) reference genome

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Phosphorylation of Translation Initiation Factor 2-Alpha in Leishmania donovani under Stress Is Necessary for Parasite Survival

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Leishmania major encodes an unusual peroxidase that is a close homologue of plant ascorbate peroxidase: a novel role of the transmembrane domain

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Ascorbate peroxidase, a key molecule regulating amphotericin B resistance in clinical isolates of Leishmania donovani

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Molecular Chaperones of Leishmania: Central Players in Many Stress-Related and -Unrelated Physiological Processes

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genomic organization and expression of the HSP70 locus in New and Old World Leishmania species

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Developmental regulation of heat shock protein 83 in Leishmania. 3' processing and mRNA stability control transcript abundance, and translation id directed by a determinant in the 3'-untranslated region.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A member of the ClpB family of stress proteins is expressed during heat shock in Leishmania spp.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Phosphoproteomic analysis of Leishmania donovani pro- and amastigote stages

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Retooling Leishmania metabolism: from sand fly gut to human macrophage

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Overexpression of histone H2A modulates drug susceptibility in Leishmania parasites

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Analysis of membrane-enriched and high molecular weight proteins in Leishmania infantum promastigotes and axenic amastigotes

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Differential quantitative proteomic profiling of Leishmania infantum and Leishmania mexicana density gradient separated membranous fractions.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A new developmentally regulated gene family in Leishmania amastigotes encoding a homolog of amastin surface proteins

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Analysis of stage-specific expression of basic proteins in Leishmania infantum

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A novel protein coding potential of long intergenic non-coding RNAs (lincRNAs) in the kinetoplastid protozoan parasite Leishmania major

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A toolkit enabling efficient, scalable and reproducible gene tagging in trypanosomatids.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The ways of action of long non-coding RNAs in cytoplasm and nucleus

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Modulation of Leishmania ABC protein gene expression through life stages and among drug-resistant parasites.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Mitochondrial origin-binding protein UMSBP mediates DNA replication and segregation in trypanosomes

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Arginine methylation of DRBD18 differentially impacts its opposing effects on the trypanosome transcriptome

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Gene duplication in trypanosomatids - two DED1 paralogs are functionally redundant and differentially expressed during the life cycle.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genomic DNA macroarrays as a tool for analysis of gene expression in Leishmania

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The evolution of amastin surface glycoproteins in trypanosomatid parasites

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

The heat-shock response

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Fast gapped-read alignment with Bowtie 2

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

HTSeq--a Python framework to work with high-throughput sequencing data

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

Genomic organization and functional characterization of the Leishmania major Friedlin ribosomal RNA gene locus.

1 reference

https://api.crossref.org/works/10.1038/S41598-019-43354-9

7 January 2021

A differentially expressed gene family encoding "amastin," a surface protein of Trypanosoma cruzi amastigotes.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/31061406

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41598-019-43354-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31061406 AND SRC:MED&resulttype=core&format=json

24 April 2020

PubMed publication ID

31061406

1 reference