Dynamic Transcriptome Profiling Dataset of Vaccinia Virus Obtained from Long-read Sequencing Techniques (Q59350055)

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scientific article published on 01 December 2018

Dynamic transcriptome profiling dataset of vaccinia virus obtained from long-read sequencing techniques

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English	Dynamic Transcriptome Profiling Dataset of Vaccinia Virus Obtained from Long-read Sequencing Techniques	scientific article published on 01 December 2018	Dynamic transcriptome profiling dataset of vaccinia virus obtained from long-read sequencing techniques

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Dynamic transcriptome profiling dataset of vaccinia virus obtained from long-read sequencing techniques (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30476066 AND SRC:MED&resulttype=core&format=json

5 May 2020

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vaccinia virus

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István Prazsák

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5 May 2020

3

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5 May 2020

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5 May 2020

Zsolt Boldogkői

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5 May 2020

Michael P. Snyder

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Michael Snyder

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5 May 2020

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Dóra Tombácz

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23 November 2018

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7

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5 May 2020

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Creative Commons Attribution 4.0 International

23 November 2018

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April 2022 Public Data File from Crossref

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Mutational analysis of the core, spacer, and initiator regions of vaccinia virus intermediate-class promoters

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Structure of vaccinia virus early promoters

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Structure of vaccinia virus late promoters

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Homology between RNA polymerases of poxviruses, prokaryotes, and eukaryotes: nucleotide sequence and transcriptional analysis of vaccinia virus genes encoding 147-kDa and 22-kDa subunits

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Vaccinia virus transcription

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

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Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes

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The Sequence Alignment/Map format and SAMtools

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Circos: an information aesthetic for comparative genomics

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Simultaneous high-resolution analysis of vaccinia virus and host cell transcriptomes by deep RNA sequencing

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Orthopox Viruses: Infections in Humans

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Genome-wide analysis of the 5' and 3' ends of vaccinia virus early mRNAs delineates regulatory sequences of annotated and anomalous transcripts

1 reference

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Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

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Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

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Pervasive initiation and 3'-end formation of poxvirus postreplicative RNAs

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Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

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Identification of direct targets and modified bases of RNA cytosine methyltransferases

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Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs

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Cascade regulation of vaccinia virus gene expression is modulated by multistage promoters

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Characterizing 5-methylcytosine in the mammalian epitranscriptome

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Methylation modifications in eukaryotic messenger RNA.

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Life without A tail: new formats of long noncoding RNAs

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BEDTools: The Swiss-Army Tool for Genome Feature Analysis.

1 reference

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Deciphering poxvirus gene expression by RNA sequencing and ribosome profiling

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Full-Length Isoform Sequencing Reveals Novel Transcripts and Substantial Transcriptional Overlaps in a Herpesvirus

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Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain.

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Long-Read Isoform Sequencing Reveals a Hidden Complexity of the Transcriptional Landscape of Herpes Simplex Virus Type 1.

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Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis.

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1 reference

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Long-Read Sequencing of Human Cytomegalovirus Transcriptome Reveals RNA Isoforms Carrying Distinct Coding Potentials.

1 reference

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1 reference

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SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Long-read sequencing uncovers a complex transcriptome topology in varicella zoster virus

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Identifiers

10.1093/GIGASCIENCE/GIY139

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30476066 AND SRC:MED&resulttype=core&format=json

5 May 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30476066 AND SRC:MED&resulttype=core&format=json

5 May 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30476066 AND SRC:MED&resulttype=core&format=json

5 May 2020

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