Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes (Q59058533)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27075100 AND SRC:MED&resulttype=core&format=json

1 April 2020

title

Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes (English)

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1 April 2020

2

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1 April 2020

Jason Wong

6

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1 April 2020

author name string

Dilmi Perera

1

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1 April 2020

Anushi Shah

3

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1 April 2020

Dominik Beck

4

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1 April 2020

John E Pimanda

5

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1 April 2020

language of work or name

English

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publication date

1 April 2016

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1 April 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27075100 AND SRC:MED&resulttype=core&format=json

1 April 2020

volume

532

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1 April 2020

issue

7598

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1 April 2020

page(s)

259-263

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Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.

1 April 2020

cites work

1 reference

Genome-wide analysis of noncoding regulatory mutations in cancer

21 January 2018

1 reference

Recurrent somatic mutations in regulatory regions of human cancer genomes

21 January 2018

1 reference

Systematic Screening of Promoter Regions Pinpoints Functional Cis-Regulatory Mutations in a Cutaneous Melanoma Genome

21 January 2018

1 reference

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

21 January 2018

1 reference

Signatures of mutational processes in human cancer

21 January 2018

1 reference

Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

21 January 2018

1 reference

Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes.

21 January 2018

1 reference

A comprehensive catalogue of somatic mutations from a human cancer genome

21 January 2018

1 reference

A small-cell lung cancer genome with complex signatures of tobacco exposure

21 January 2018

1 reference

Integrative annotation of variants from 1092 humans: application to cancer genomics

21 January 2018

1 reference

DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes

21 January 2018

1 reference

Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair

21 January 2018

1 reference

Chromatin organization is a major influence on regional mutation rates in human cancer cells

21 January 2018

1 reference

DNA replication timing and selection shape the landscape of nucleotide variation in cancer genomes

21 January 2018

1 reference

Differential DNA mismatch repair underlies mutation rate variation across the human genome

21 January 2018

1 reference

Cell-of-origin chromatin organization shapes the mutational landscape of cancer

21 January 2018

1 reference

An atlas of active enhancers across human cell types and tissues

21 January 2018

1 reference

A large fraction of extragenic RNA pol II transcription sites overlap enhancers

21 January 2018

1 reference

Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

21 January 2018

1 reference

Cell cycle-independent removal of UV-induced pyrimidine dimers from the promoter and the transcription initiation domain of the human CDC2 gene

21 January 2018

1 reference

UV Light as a Footprinting Agent: Modulation of UV-induced DNA Damage by Transcription Factors Bound at the Promoters of Three Human Genes

21 January 2018

1 reference

Influence of cytosine methylation on ultraviolet-induced cyclobutane pyrimidine dimer formation in genomic DNA.

21 January 2018

1 reference

Rapid deamination of cyclobutane pyrimidine dimer photoproducts at TCG sites in a translationally and rotationally positioned nucleosome in vivo.

21 January 2018

1 reference

Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism

21 January 2018

1 reference

A promoter-level mammalian expression atlas

21 January 2018

1 reference

TERT promoter mutations in familial and sporadic melanoma

21 January 2018

1 reference

Highly recurrent TERT promoter mutations in human melanoma

21 January 2018

1 reference

The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data

21 January 2018

1 reference

Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs

21 January 2018

1 reference

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 January 2018

1 reference

ChromHMM: automating chromatin-state discovery and characterization

21 January 2018

1 reference

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

An integrated map of genetic variation from 1,092 human genomes

21 January 2018

1 reference

A census of human cancer genes

21 January 2018

1 reference

Distribution and intensity of constraint in mammalian genomic sequence

21 January 2018

1 reference

CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting

21 January 2018

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

An expansive human regulatory lexicon encoded in transcription factor footprints

21 January 2018

1 reference

Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data

21 January 2018

1 reference

Trimmomatic: a flexible trimmer for Illumina sequence data

21 January 2018

1 reference

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

The Human Epigenome Browser at Washington University

21 January 2018

1 reference

deepTools: a flexible platform for exploring deep-sequencing data.

21 January 2018

1 reference

DNA repair domains within a human gene: selective repair of sequences near the transcription initiation site

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27075100

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE17437

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27075100 AND SRC:MED&resulttype=core&format=json

journals/nature/PereraPSBPW16

1 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1009662210

0 references

1 reference