Computational prediction of changes in brain metabolic fluxes during Parkinson's disease from mRNA expression (Q58747839)

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scientific article published in PLoS ONE

Computational prediction of changes in brain metabolic fluxes during Parkinson’s disease from mRNA expression

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English	Computational prediction of changes in brain metabolic fluxes during Parkinson's disease from mRNA expression	scientific article published in PLoS ONE	Computational prediction of changes in brain metabolic fluxes during Parkinson’s disease from mRNA expression

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scholarly article

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

Computational prediction of changes in brain metabolic fluxes during Parkinson's disease from mRNA expression (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

Parkinson's disease

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based on heuristic

inferred from title

Farahaniza Supandi

1

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

Johannes van Beek

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

author name string

Farahaniza Supandi

1

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Johannes H G M van Beek

2

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publication date

12 September 2018

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

13

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

9

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

e0203687

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

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Creative Commons Attribution 4.0 International

12 September 2018

1 reference

April 2022 Public Data File from Crossref

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0 references

Systems-level analysis of mechanisms regulating yeast metabolic flux

1 reference

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30 November 2018

Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism

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30 November 2018

Dysregulation of glucose metabolism is an early event in sporadic Parkinson's disease

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30 November 2018

Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach

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30 November 2018

RELATCH: relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations.

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30 November 2018

Improving metabolic flux predictions using absolute gene expression data

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30 November 2018

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30 November 2018

Large-scale in silico modeling of metabolic interactions between cell types in the human brain

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30 November 2018

PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease

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30 November 2018

Effects of GPi and STN inactivation on physiological, motor, cognitive and motivational processes in animal models of Parkinson's disease

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30 November 2018

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30 November 2018

Complex I: inhibitors, inhibition and neurodegeneration

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30 November 2018

Cortical hypometabolism and hypoperfusion in Parkinson's disease is extensive: probably even at early disease stages.

1 reference

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30 November 2018

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

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30 November 2018

Mining biological pathways using WikiPathways web services

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30 November 2018

Multinuclear magnetic resonance spectroscopy for in vivo assessment of mitochondrial dysfunction in Parkinson's disease

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

Mitochondrial dysfunction in the limelight of Parkinson's disease pathogenesis

1 reference

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30 November 2018

Presenting and exploring biological pathways with PathVisio

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30 November 2018

Context-specific metabolic networks are consistent with experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

Complex I deficiency in Parkinson's disease frontal cortex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

Effects of gender on nigral gene expression and parkinson disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

Increased pentose phosphate pathway flux after clinical traumatic brain injury: a [1,2-13C2]glucose labeling study in humans

1 reference

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30 November 2018

Molecular markers of early Parkinson's disease based on gene expression in blood

1 reference

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30 November 2018

Multiregional gene expression profiling identifies MRPS6 as a possible candidate gene for Parkinson's disease

1 reference

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30 November 2018

Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases

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30 November 2018

Transcriptional changes in multiple system atrophy and Parkinson's disease putamen

1 reference

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30 November 2018

Neuronal-glial glucose oxidation and glutamatergic-GABAergic function.

1 reference

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30 November 2018

Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6135490

30 November 2018

Transcriptional analysis of multiple brain regions in Parkinson's disease supports the involvement of specific protein processing, energy metabolism, and signaling pathways, and suggests novel disease mechanisms

1 reference

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1 reference

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30 November 2018

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Deficits in a tricarboxylic acid cycle enzyme in brains from patients with Parkinson's disease

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30 November 2018

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30 November 2018

KEGG: kyoto encyclopedia of genes and genomes

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1 reference

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Differential neuronal activity in segments of globus pallidus in Parkinson's disease patients

1 reference

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30 November 2018

Role of mitochondria in the etiology and pathogenesis of Parkinson's disease

1 reference

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30 November 2018

The operation of the γ-aminobutyrate bypath of the tricarboxylic acid cycle in brain tissue in vitro

1 reference

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The GABA and substance P input to dopaminergic neurones in the substantia nigra of the rat

1 reference

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Mitochondrial complex I deficiency in Parkinson's disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/30208076

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/30208076

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proton MR spectroscopy of the brain in 14 patients with Parkinson disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/30208076

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression profiling of parkinsonian substantia nigra pars compacta; alterations in ubiquitin-proteasome, heat shock protein, iron and oxidative stress regulated proteins, cell adhesion/cellular matrix and vesicle trafficking genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30208076

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Network-based prediction of human tissue-specific metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/30208076

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial Dysfunction in Parkinson's Disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/30208076

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0203687

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30208076 AND SRC:MED&resulttype=core&format=json

22 April 2020

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