Collaboration of tRNA modifications and elongation factor eEF1A in decoding and nonsense suppression (Q58707914)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30143741 AND SRC:MED&resulttype=core&format=json

19 April 2020

title

Collaboration of tRNA modifications and elongation factor eEF1A in decoding and nonsense suppression (English)

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19 April 2020

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1

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19 April 2020

Raffael Schaffrath

series ordinal

2

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19 April 2020

author name string

Roland Klassen

series ordinal

1

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Raffael Schaffrath

series ordinal

2

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language of work or name

English

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publication date

24 August 2018

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19 April 2020

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19 April 2020

volume

8

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19 April 2020

issue

1

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19 April 2020

page(s)

12749

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Creative Commons Attribution 4.0 International

19 April 2020

copyright license

start time

24 August 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Lack of 2'-O-methylation in the tRNA anticodon loop of two phylogenetically distant yeast species activates the general amino acid control pathway.

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Cooperativity between different tRNA modifications and their modification pathways

30 November 2018

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MODOMICS: a database of RNA modification pathways. 2017 update

30 November 2018

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Use of a Yeast tRNase Killer Toxin to Diagnose Kti12 Motifs Required for tRNA Modification by Elongator.

30 November 2018

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Celebrating wobble decoding: Half a century and still much is new.

30 November 2018

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Thio-Modification of tRNA at the Wobble Position as Regulator of the Kinetics of Decoding and Translocation on the Ribosome

30 November 2018

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Sulfur transfer and activation by ubiquitin-like modifier system Uba4•Urm1 link protein urmylation and tRNA thiolation in yeast

30 November 2018

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Chemical and Conformational Diversity of Modified Nucleosides Affects tRNA Structure and Function

30 November 2018

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Wobble uridine modifications-a reason to live, a reason to die?!

30 November 2018

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Role of Pseudouridine Formation by Deg1 for Functionality of Two Glutamine Isoacceptor tRNAs

30 November 2018

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Independent suppression of ribosomal 1 frameshifts by different tRNA anticodon loop modifications.

30 November 2018

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A global genetic interaction network maps a wiring diagram of cellular function

30 November 2018

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tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast

30 November 2018

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An integrated, structure- and energy-based view of the genetic code

30 November 2018

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The role of wobble uridine modifications in 1 translational frameshifting in eukaryotes.

30 November 2018

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Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity

30 November 2018

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Loss of anticodon wobble uridine modifications affects tRNA(Lys) function and protein levels in Saccharomyces cerevisiae

30 November 2018

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Pseudouridine: still mysterious, but never a fake (uridine)!

30 November 2018

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Phosphorylation of Elp1 by Hrr25 is required for elongator-dependent tRNA modification in yeast.

30 November 2018

1 reference

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Functional importance of Ψ38 and Ψ39 in distinct tRNAs, amplified for tRNAGln(UUG) by unexpected temperature sensitivity of the s2U modification in yeast

30 November 2018

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The contribution of pseudouridine to stabilities and structure of RNAs

30 November 2018

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tRNA tKUUU, tQUUG, and tEUUC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding.

30 November 2018

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Actin dosage lethality screening in yeast mediated by selective ploidy ablation reveals links to urmylation/wobble codon recognition and chromosome stability

30 November 2018

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A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification.

30 November 2018

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A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation

30 November 2018

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NMD: a multifaceted response to premature translational termination

30 November 2018

1 reference

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Mutations in NSUN2 cause autosomal-recessive intellectual disability.

30 November 2018

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Human tRNALys3UUU Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto–Enol Tautomerism

30 November 2018

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Elongator function depends on antagonistic regulation by casein kinase Hrr25 and protein phosphatase Sit4.

30 November 2018

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Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions.

30 November 2018

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30 November 2018

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A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae

30 November 2018

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Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems

30 November 2018

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A versatile partner of eukaryotic protein complexes that is involved in multiple biological processes: Kti11/Dph3.

30 November 2018

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Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications

30 November 2018

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Yeast alpha-tubulin suppressor Ats1/Kti13 relates to the Elongator complex and interacts with Elongator partner protein Kti11.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Eukaryotic wobble uridine modifications promote a functionally redundant decoding system.

30 November 2018

1 reference

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Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Mg2 binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

tRNAGlu wobble uridine methylation by Trm9 identifies Elongator's key role for zymocin-induced cell death in yeast

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

An early step in wobble uridine tRNA modification requires the Elongator complex

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

The GTP-binding release factor eRF3 as a key mediator coupling translation termination to mRNA decay

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

The specificities of four yeast dihydrouridine synthases for cytoplasmic tRNAs

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Novel methyltransferase for modified uridine residues at the wobble position of tRNA.

30 November 2018

1 reference

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The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:Psi-synthase also acting on tRNAs

30 November 2018

1 reference

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Getting started with yeast

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Molecular analysis of KTI12/TOT4, a Saccharomyces cerevisiae gene required for Kluyveromyces lactis zymocin action

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast

30 November 2018

1 reference

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Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocin

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of psi 38 and psi 39 in tRNA anticodon loop.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Isolation and characterization of MOD5, a gene required for isopentenylation of cytoplasmic and mitochondrial tRNAs of Saccharomyces cerevisiae

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Elongation factor EF-1 alpha gene dosage alters translational fidelity in Saccharomyces cerevisiae

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Isolation and characterization of the TRM1 locus, a gene essential for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNA in Saccharomyces cerevisiae.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Nucleotide sequence of a mutant eukaryotic gene: the yeast tyrosine-inserting ochre suppressor SUP4-o

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6109124

Antisuppression of class I suppressors in an isopentenylated-transfer RNA deficient mutant of Saccharomyces cerevisiae

30 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038/S41598-018-31158-2

inferred from DOI database lookup

7 January 2021

based on heuristic

The yeast tRNATyr gene intron is essential for correct modification of its tRNA product

1 reference

Crossref

https://api.crossref.org/works/10.1038/S41598-018-31158-2

inferred from DOI database lookup

7 January 2021

based on heuristic

A mutant allele of the SUP45 (SAL4) gene of Saccharomyces cerevisiae shows temperature-dependent allosuppressor and omnipotent suppressor phenotypes

1 reference

Crossref

https://api.crossref.org/works/10.1038/S41598-018-31158-2

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41598-018-31158-2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30143741 AND SRC:MED&resulttype=core&format=json

19 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30143741 AND SRC:MED&resulttype=core&format=json

19 April 2020

PubMed publication ID

30143741

1 reference