Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents (Q57795905)

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30 April 2020

title

Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents (English)

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Christophe Klopp

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Olivier Bouchez

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author name string

Audrey Segura

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Marine Bertoni

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Pauline Auffret

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Clémence Genthon

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Alexandra Durand

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Yolande Bertin

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language of work or name

English

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publication date

23 October 2018

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volume

19

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1

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766

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Creative Commons Attribution 4.0 International

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23 October 2018

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10 June 2022

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Cattle lack vascular receptors for Escherichia coli O157:H7 Shiga toxins

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Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

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Displacement of Escherichia coli O157:H7 from rumen medium containing prebiotic sugars

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Expression of receptors for verotoxin 1 from Escherichia coli O157 on bovine intestinal epithelium

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Gastrointestinal tract location of Escherichia coli O157:H7 in ruminants

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13C and 1H nuclear magnetic resonance study of glycogen futile cycling in strains of the genus Fibrobacter

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Lymphoid follicle-dense mucosa at the terminal rectum is the principal site of colonization of enterohemorrhagic Escherichia coli O157:H7 in the bovine host

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Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine

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Carbon nutrition of Escherichia coli in the mouse intestine

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Identification of Escherichia coli O157 : H7 genes influencing colonization of the bovine gastrointestinal tract using signature-tagged mutagenesis

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Escherichia coli O157:H7 colonization at the rectoanal junction of long-duration culture-positive cattle

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Respiration of Escherichia coli in the mouse intestine

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Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine

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Glycogen and maltose utilization by Escherichia coli O157:H7 in the mouse intestine

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E. coli O157:H7 catabolism of intestinal mucin-derived carbohydrates and colonization

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Precolonized human commensal Escherichia coli strains serve as a barrier to E. coli O157:H7 growth in the streptomycin-treated mouse intestine

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Fast and accurate short read alignment with Burrows-Wheeler transform

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The NCBI BioSystems database

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Fates of acid-resistant and non-acid-resistant Shiga toxin-producing Escherichia coli strains in ruminant digestive contents in the absence and presence of probiotics

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Distribution of Shiga-toxigenic Escherichia coli O157 in the gastrointestinal tract of naturally O157-shedding cattle at necropsy

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12 December 2020

Enterohaemorrhagic Escherichia coli gains a competitive advantage by using ethanolamine as a nitrogen source in the bovine intestinal content

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Anaerobic Respiration of Escherichia coli in the Mouse Intestine

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12 December 2020

Bovine recto-anal junction squamous epithelial (RSE) cell adhesion assay for studying Escherichia coli O157 adherence

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Ethanolamine controls expression of genes encoding components involved in interkingdom signaling and virulence in enterohemorrhagic Escherichia coli O157:H7

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12 December 2020

NG6: Integrated next generation sequencing storage and processing environment

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12 December 2020

Carbohydrate utilization by enterohaemorrhagic Escherichia coli O157:H7 in bovine intestinal content

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12 December 2020

Role of oxygen gradients in shaping redox relationships between the human intestine and its microbiota

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Fucose sensing regulates bacterial intestinal colonization

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A unique in vivo experimental approach reveals metabolic adaptation of the probiotic Propionibacterium freudenreichii to the colon environment

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Capacity of the bovine intestinal mucus and its components to support growth of Escherichia coli O157:H7.

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The gluconeogenesis pathway is involved in maintenance of enterohaemorrhagic Escherichia coli O157:H7 in bovine intestinal content

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A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933.

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Overview and Historical Perspectives

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Animal Reservoirs of Shiga Toxin-Producing Escherichia coli

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Diarrheagenic Escherichia coli

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Interactions of Intestinal Bacteria with Components of the Intestinal Mucus

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Lactobacillus reuteri suppresses E. coli O157:H7 in bovine ruminal fluid: Toward a pre-slaughter strategy to improve food safety?

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12 December 2020

Factors Involved in the Persistence of a Shiga Toxin-Producing Escherichia coli O157:H7 Strain in Bovine Feces and Gastro-Intestinal Content.

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12 December 2020

Aspartate metabolism is involved in the maintenance of enterohaemorrhagic Escherichia coli O157:H7 in bovine intestinal content

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12 December 2020

10.1186/S12864-018-5167-Y

Identifiers

DOI

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30 April 2020

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30 April 2020

PubMed publication ID

30352567

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