Application of metagenomics to assess microbial communities in water and other environmental matrices (Q57603397)

https://api.crossref.org/works/10.1017/S0025315415001496

Bayesian community-wide culture-independent microbial source tracking

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Effects of OTU clustering and PCR artifacts on microbial diversity estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Defining seasonal marine microbial community dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

The seasonal structure of microbial communities in the Western English Channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Synchrony and seasonality in bacterioplankton communities of two temperate rivers

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Evidence for a persistent microbial seed bank throughout the global ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

UCHIME improves sensitivity and speed of chimera detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

A primer on metagenomics

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River.

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Marine metagenomics, a valuable tool for enzymes and bioactive compounds discovery

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Advances in computational analysis of metagenome sequences.

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Deep sequencing of non-ribosomal peptide synthetases and polyketide synthases from the microbiomes of Australian marine sponges.

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Frequencies of heavy metal resistance are associated with land cover type in the Upper Mississippi River

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Integrated online system for a pyrosequencing-based microbial source tracking method that targets Bacteroidetes 16S rDNA.

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Metagenomic analysis of viruses in reclaimed water

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Metagenomes of Mediterranean Coastal Lagoons

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

The impact of next-generation sequencing technology on genetics

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

High-throughput DNA sequencing--concepts and limitations

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Accuracy and quality of massively parallel DNA pyrosequencing

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Metagenomics reveals our incomplete knowledge of global diversity

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Bacterial community diversity and variation in spray water sources and the tomato fruit surface

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Unlocking the potential of metagenomics through replicated experimental design

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Comparison of multiple metagenomes using phylogenetic networks based on ecological indices

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Recovering sustainable water from wastewater.

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Microbial metagenomics: beyond the genome

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Emerging trends in genomic approaches for microbial bioprospecting

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

QIIME allows analysis of high-throughput community sequencing data

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Microbial source tracking markers for detection of fecal contamination in environmental waters: relationships between pathogens and human health outcomes

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

MEGAN analysis of metagenomic data

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Marine metagenomics: strategies for the discovery of novel enzymes with biotechnological applications from marine environments

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

rrndb: the Ribosomal RNA Operon Copy Number Database

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Predicting bacterial community assemblages using an artificial neural network approach

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

ARB: a software environment for sequence data

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

A microbial signature approach to identify fecal pollution in the waters off an urbanized coast of Lake Michigan

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Identifying biologically relevant differences between metagenomic communities

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Emerging concepts promising new horizons for marine biodiscovery and synthetic biology

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Bacterial community structure is indicative of chemical inputs in the Upper Mississippi River

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

CAMERA: a community resource for metagenomics

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Comparison of the microbial community structures of untreated wastewaters from different geographic locales

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

High-throughput functional screening reveals low frequency of antibiotic resistance genes in DNA recovered from the Upper Mississippi River

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Metagenomics: microbial diversity through a scratched lens

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Characterization of novel antibiotic resistance genes identified by functional metagenomics on soil samples.

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Use of barcoded pyrosequencing and shared OTUs to determine sources of fecal bacteria in watersheds.

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Detection of African swine fever virus-like sequences in ponds in the Mississippi Delta through metagenomic sequencing

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021

Metagenomics: Facts and Artifacts, and Computational Challenges*

1 reference

https://api.crossref.org/works/10.1017/S0025315415001496

7 January 2021