RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis (Q56901988)

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article published in 1999

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English	RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis	article published in 1999

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scholarly article

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RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis (English)

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author name string

K Sivakumaran

1

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C H Kim

2

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R Tayon

3

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C C Kao

4

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language of work or name

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publication date

3 December 1999

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Journal of Molecular Biology

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294

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3

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667-82

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The 5′-terminal sequences of the genomic RNAs of several alphaviruses

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Purification, characterization, and comparison of poliovirus RNA polymerase from native and recombinant sources

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Moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase

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Improved predictions of secondary structures for RNA

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Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

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Infectious in vitro transcripts from cowpea chlorotic mottle virus cDNA clones and exchange of individual RNA components with brome mosaic virus

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Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase

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A brome mosaic virus intergenic RNA3 replication signal functions with viral replication protein 1a to dramatically stabilize RNA in vivo.

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Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase

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Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination

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Primary and secondary structural elements required for synthesis of barley yellow dwarf virus subgenomic RNA1.

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Characterization of bacteriophage T4 regA protein-nucleic acid interactions

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Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter

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Initiation of (-)-strand RNA synthesis catalyzed by the BMV RNA-dependent RNA polymerase: synthesis of oligonucleotides

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Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase

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Highly active template-specific RNA-dependent RNA polymerase from barley leaves infected with brome mosaic virus

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Characterization of RNA products associated with or aborted by a viral RNA-dependent RNA polymerase

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Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: a quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions

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Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase.

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The nucleotide sequence and genome organization of the RNA2 and RNA3 segments in broad bean mottle virus

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Initiation of genomic plus-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase.

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Coronavirus subgenomic minus-strand RNAs and the potential for mRNA replicons

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Transcript elongation and termination are competitive kinetic processes

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Absorbance melting curves of RNA.

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https://pubmed.ncbi.nlm.nih.gov/10610788

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Single-stranded RNA recognition by the bacteriophage T4 translational repressor, regA.

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Spatial perturbations within an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase (RdRp) reveal that RdRp can adjust its promoter binding sites.

1 reference

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Initially transcribed sequences strongly affect the extent of abortive initiation by RNA polymerase II

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The 3′-non-coding regions of alpharivus RNAs contain repeating sequences

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Coronavirus transcription: subgenomic mouse hepatitis virus replicative intermediates function in RNA synthesis.

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Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure

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Structure of the polyadenylation regulatory element of the human U1A pre-mRNA 3'-untranslated region and interaction with the U1A protein

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Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA

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RNA structure prediction

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Sequences 5' of the conserved tRNA-like promoter modulate the initiation of minus-strand synthesis by the brome mosaic virus RNA-dependent RNA polymerase

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Cosuppression Comes to the Animals

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Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution

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The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

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RNA structure and NMR spectroscopy

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Protein-RNA recognition

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A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex

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Long-distance RNA-RNA interactions and conserved sequence elements affect potato virus X plus-strand RNA accumulation

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Molecular studies of genetic RNA-RNA recombination in brome mosaic virus

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Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains

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Regulation of ( ):(-)-strand asymmetry in replication of brome mosaic virus RNA.

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Sequence studies of several alphavirus genomic RNAs in the region containing the start of the subgenomic RNA

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Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA.

1 reference

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Genome sequences of a mouse-avirulent and a mouse-virulent strain of Ross River virus

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Near identity of 3- RNA secondary structure in bromoviruses and cucumber mosaic virus

1 reference

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RNA synthesis by the brome mosaic virus RNA-dependent RNA polymerase: transition from initiation to elongation

1 reference

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Antisense globin RNA in mouse erythroid tissues: structure, origin, and possible function

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Identification of poliovirus polypeptide P63 as a soluble RNA-dependent RNA polymerase

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Complete sequence of the genomic RNA of O'nyong-nyong virus and its use in the construction of alphavirus phylogenetic trees

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Structure of the Ockelbo virus genome and its relationship to other sindbis viruses

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Purification and characterization of brome mosaic virus RNA-dependent RNA polymerase

1 reference

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Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase

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Aura virus is a New World representative of Sindbis-like viruses

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Mapping sequences active in homologous RNA recombination in brome mosaic virus: prediction of recombination hot spots

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Comparison of the replication of positive-stranded RNA viruses of plants and animals

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Synthesis and purification of large amounts of RNA oligonucleotides.

1 reference

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Sequence homology at the 3'-termini of the four RNAs of alfalfa mosaic virus

1 reference

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Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity

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Protein-facilitated RNA folding

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RNA-mediated trans-activation of transcription from a viral RNA.

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Bromovirus RNA replication and transcription

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Use of DNA, RNA, and chimeric templates by a viral RNA-dependent RNA polymerase: evolutionary implications for the transition from the RNA to the DNA world.

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Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

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12 December 2020

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Identifiers

10.1006/JMBI.1999.3297

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