Phylogenomics for Systematic Biology (Q56878323)

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

A comprehensive multilocus phylogeny of the Neotropical cotingas (Cotingidae, Aves) with a comparative evolutionary analysis of breeding system and plumage dimorphism and a revised phylogenetic classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

BEAST 2: a software platform for Bayesian evolutionary analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Exon capture phylogenomics: efficacy across scales of divergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Assessing approaches for inferring species trees from multi-copy genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Is a new and general theory of molecular systematics emerging?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Dealing with incongruence in phylogenomic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Genome-wide ultraconserved elements exhibit higher phylogenetic informativeness than traditional gene markers in percomorph fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Effects of missing data on species tree estimation under the coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Statistics and truth in phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

The influence of gene flow on species tree estimation: a simulation study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Statistical binning enables an accurate coalescent-based estimation of the avian tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

MRL and SuperFine MRL: new supertree methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Rooting the eutherian tree: the power and pitfalls of phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Genome-scale phylogeny and the detection of systematic biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Phylogenetic inference based on matrix representation of trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Unified modeling of gene duplication, loss, and coalescence using a locus tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Inferring phylogenies from RAD sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Inferring ancient divergences requires genes with strong phylogenetic signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

A confounding effect of missing data on character conflict in maximum likelihood and Bayesian MCMC phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

21 January 2018

The gene tree delusion

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Maximum likelihood supertrees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

The inference of gene trees with species trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Concatenation and Species Tree Methods Exhibit Statistically Indistinguishable Accuracy under a Range of Simulated Conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Missing data in phylogenetic analysis: reconciling results from simulations and empirical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

The Impact of Missing Data on Species Tree Estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/SYSBIO/SYW027