GOATOOLS: A Python library for Gene Ontology analyses (Q56395536)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30022098 AND SRC:MED&resulttype=core&format=json

12 April 2020

title

GOATOOLS: A Python library for Gene Ontology analyses (English)

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12 April 2020

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12 April 2020

Jeffrey M Yunes

8

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12 April 2020

Christophe Dessimoz

12

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12 April 2020

Haibao Tang

14

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12 April 2020

Christopher J. Mungall

7

object named as

Christopher J Mungall

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12 April 2020

9

Olga Botvinnik

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12 April 2020

author name string

D V Klopfenstein

1

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12 April 2020

Brent S Pedersen

3

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12 April 2020

Fidel Ramírez

4

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12 April 2020

Alex Warwick Vesztrocy

5

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12 April 2020

Aurélien Naldi

6

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12 April 2020

Mark Weigel

10

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12 April 2020

Will Dampier

11

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12 April 2020

Patrick Flick

13

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12 April 2020

language of work or name

English

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publication date

18 July 2018

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12 April 2020

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12 April 2020

volume

8

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12 April 2020

issue

1

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12 April 2020

page(s)

10872

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Creative Commons Attribution 4.0 International

12 April 2020

copyright license

start time

18 July 2018

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

Jupyter notebook file

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maintained by WikiProject

WikiProject Software

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cites work

Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Expansion of the Gene Ontology knowledgebase and resources

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Visualizing GO Annotations

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Gene Ontology: Pitfalls, Biases, and Remedies

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Impact of outdated gene annotations on pathway enrichment analysis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

De novo assembly and characterization of the spleen transcriptome of common carp (Cyprinus carpio) using Illumina paired-end sequencing

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Dynamics of B cells in germinal centres

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Standardized description of scientific evidence using the Evidence Ontology (ECO)

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

False discovery rate control is a recommended alternative to Bonferroni-type adjustments in health studies

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Multiple hypothesis testing in genomics.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

REVIGO summarizes and visualizes long lists of gene ontology terms

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

How does multiple testing correction work?

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Enrichment or depletion of a GO category within a class of genes: which test?

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

GO PaD: the Gene Ontology Partition Database

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Using GOstats to test gene lists for GO term association

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

Gene ontology: tool for the unification of biology

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6052049

10.1038/S41598-018-28948-Z

29 September 2018

Identifiers

DOI

1 reference

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Dimensions Publication ID

12 April 2020

0 references

1 reference

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12 April 2020

PubMed publication ID

30022098

1 reference