Thermodynamics of Go-type models for protein folding (Q51961147)

19 April 2018

title

Thermodynamics of Go-type models for protein folding (English)

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2

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Antonio Rey

series ordinal

3

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author name string

Lidia Prieto

series ordinal

1

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language of work or name

English

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publication date

1 October 2005

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Journal of Chemical Physics

published in

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volume

123

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issue

15

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page(s)

154903

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Meeting halfway on the bridge between protein folding theory and experiment

cites work

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Is the molten globule a third phase of proteins?

21 January 2018

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Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

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Analysis of multiple folding routes of proteins by a coarse-grained dynamics model

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The effects of nonnative interactions on protein folding rates: theory and simulation

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Validity of Gō models: comparison with a solvent-shielded empirical energy decomposition

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Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

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Folding thermodynamics of a model three-helix-bundle protein.

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Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis.

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Folding thermodynamics of model four-strand antiparallel beta-sheet proteins

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Optimal allocation of replicas in parallel tempering simulations

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The Protein Data Bank

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A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

21 January 2018

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Thermodynamic analysis of the folding of the streptococcal protein G IgG-binding domains B1 and B2: why small proteins tend to have high denaturation temperatures

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Kinetic analysis of folding and unfolding the 56 amino acid IgG-binding domain of streptococcal protein G.

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Insights into conformation and dynamics of protein GB1 during folding and unfolding by NMR.

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Critical role of beta-hairpin formation in protein G folding.

21 January 2018

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The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation

21 January 2018

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Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model

21 January 2018

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Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

21 January 2018

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A simple thermodynamic test to discriminate between two-state and downhill folding.

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One-state downhill versus conventional protein folding

21 January 2018

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Robustness of downhill folding: guidelines for the analysis of equilibrium folding experiments on small proteins.

21 January 2018

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Funnels, pathways, and the energy landscape of protein folding: a synthesis

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Thermodynamics and kinetics of downhill protein folding investigated with a simple statistical mechanical model

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The role of sidechain packing and native contact interactions in folding: Discontinuous molecular dynamics folding simulations of an all-atom Gō model of fragment B of Staphylococcal protein A

21 January 2018

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Thermodynamics of an All-Atom Off-Lattice Model of the Fragment B ofStaphylococcalProtein A: Implication for the Origin of the Cooperativity of Protein Folding

21 January 2018

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21 January 2018

Identifiers

DOI

10.1063/1.2064888

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