Comparison of different torsion angle approaches for NMR structure determination. (Q51944296)

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19 January 2020

title

Comparison of different torsion angle approaches for NMR structure determination (English)

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19 January 2020

1

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19 January 2020

Thérèse Malliavin

series ordinal

2

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19 January 2020

Michael Nilges

series ordinal

3

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19 January 2020

author name string

Alexey K Mazur

series ordinal

4

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19 January 2020

publication date

1 March 2006

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Journal of Biomolecular NMR

19 January 2020

published in

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19 January 2020

volume

34

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19 January 2020

issue

3

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19 January 2020

page(s)

153-166

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New methodology for computer-aided modelling of biomolecular structure and dynamics. 2. Local deformations and cycles

19 January 2020

cites work

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New methodology for computer-aided modelling of biomolecular structure and dynamics. 1. Non-cyclic structures

21 January 2018

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Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

21 January 2018

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Protein backbone angle restraints from searching a database for chemical shift and sequence homology

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Torsion angle dynamics for NMR structure calculation with the new program Dyana

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DNA dynamics in a water drop without counterions

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Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution

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Crystal structure of ribosomal protein L30e from the extreme thermophile Thermococcus celer: thermal stability and RNA binding

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Solution structure of the ribosomal protein S19 from Thermus thermophilus

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Quantitative study of the effects of chemical shift tolerances and rates of SA cooling on structure calculation from automatically assigned NOE data

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A calculation strategy for the structure determination of symmetric dimers by 1H NMR.

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NMR structure of bacterial ribosomal protein l20: implications for ribosome assembly and translational control

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Internal coordinates for molecular dynamics and minimization in structure determination and refinement

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Joint X-ray and NMR refinement of the yeast L30e-mRNA complex

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Structural changes of region 1-16 of the Alzheimer disease amyloid beta-peptide upon zinc binding and in vitro aging

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The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold

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Relative stability of protein structures determined by X-ray crystallography or NMR spectroscopy: a molecular dynamics simulation study

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Non-proline cis peptide bonds in proteins

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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Refinement of protein structures in explicit solvent

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High resolution solution structure of ribosomal protein L11-C76, a helical protein with a flexible loop that becomes structured upon binding to RNA

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RECOORD: a recalculated coordinate database of 500 proteins from the PDB using restraints from the BioMagResBank

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Calculation of protein conformations by proton-proton distance constraints. A new efficient algorithm

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Completeness of NOEs in protein structure: a statistical analysis of NMR.

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Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation.

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A global taxonomy of loops in globular proteins.

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The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases.

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NMR structure of the ribosomal protein L23 from Thermus thermophilus

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Local folding coupled to RNA binding in the yeast ribosomal protein L30

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Solution NMR structure of the 30S ribosomal protein S28E fromPyrococcus horikoshii

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The NMR structure of the 5S rRNA E-domain–protein L25 complex shows preformed and induced recognition

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Backbone H(N), N, C(alpha), C', and C(beta) assignment of the 6-phosphogluconolactonase, a 266-residue enzyme of the pentose-phosphate pathway from human parasite Trypanosoma brucei.

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Sheep prion protein synthetic peptide spanning helix 1 and beta-strand 2 (residues 142-166) shows beta-hairpin structure in solution

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Errors in protein structures

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12 December 2020

Protein solution structure calculations in solution: solvated molecular dynamics refinement of calbindin D9k

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12 December 2020

Influence of non-bonded parameters on the quality of NMR structures: a new force field for NMR structure calculation

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12 December 2020