A critical assessment of hidden markov model sub-optimal sampling strategies applied to the generation of peptide 3D models. (Q51696589)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

title

A critical assessment of hidden markov model sub-optimal sampling strategies applied to the generation of peptide 3D models (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

Pierre Tuffery

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

author name string

A Lamiable

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

publication date

18 June 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

Journal of Computational Chemistry

14 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

volume

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

issue

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

14 March 2020

page(s)

2006-2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

Peptide therapeutics: current status and future directions

14 March 2020

cites work

1 reference

Global Optimization by Basin-Hopping and the Lowest Energy Structures of Lennard-Jones Clusters Containing up to 110 Atoms

21 January 2018

1 reference

Computational techniques for efficient conformational sampling of proteins

21 January 2018

1 reference

Sampling bottlenecks in de novo protein structure prediction

21 January 2018

1 reference

De novo protein structure prediction by dynamic fragment assembly and conformational space annealing

21 January 2018

1 reference

Atomistic molecular simulations of protein folding

21 January 2018

1 reference

Enhanced sampling algorithms

21 January 2018

1 reference

A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction

21 January 2018

1 reference

Protein structure prediction: assembly of secondary structure elements by basin-hopping.

21 January 2018

1 reference

Folding Atomistic Proteins in Explicit Solvent Using Simulated Tempering.

21 January 2018

1 reference

Gaussian Accelerated Molecular Dynamics: Unconstrained Enhanced Sampling and Free Energy Calculation

21 January 2018

1 reference

Advances in free-energy-based simulations of protein folding and ligand binding.

21 January 2018

1 reference

Macromolecular modeling with rosetta

21 January 2018

1 reference

Efficient sampling in fragment-based protein structure prediction using an estimation of distribution algorithm.

21 January 2018

1 reference

The I-TASSER Suite: protein structure and function prediction.

21 January 2018

1 reference

Hidden Markov models in computational biology. Applications to protein modeling

21 January 2018

1 reference

21 January 2018

1 reference

Hidden Markov Models and their Applications in Biological Sequence Analysis

21 January 2018

1 reference

Hidden Markov model and its applications in motif findings

21 January 2018

1 reference

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

21 January 2018

1 reference

A review of three different studies on hidden markov models for epigenetic problems: a computational perspective

21 January 2018

1 reference

The prediction of amphiphilic alpha-helices

21 January 2018

1 reference

A combined transmembrane topology and signal peptide prediction method

21 January 2018

1 reference

An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes

21 January 2018

1 reference

Analysis of an optimal hidden Markov model for secondary structure prediction

21 January 2018

1 reference

HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

21 January 2018

1 reference

VitAL: Viterbi algorithm for de novo peptide design

21 January 2018

1 reference

Hidden Markov model approach for identifying the modular framework of the protein backbone.

21 January 2018

1 reference

A hidden markov model derived structural alphabet for proteins.

21 January 2018

1 reference

A generative, probabilistic model of local protein structure

21 January 2018

1 reference

Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory

21 January 2018

1 reference

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training

21 January 2018

1 reference

Error bounds for convolutional codes and an asymptotically optimum decoding algorithm

21 January 2018

1 reference

A tutorial on hidden Markov models and selected applications in speech recognition

21 January 2018

1 reference

HMM-Kalign: a tool for generating sub-optimal HMM alignments.

21 January 2018

1 reference

Decoding HMMs using the k best paths: algorithms and applications

21 January 2018

1 reference

Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm.

21 January 2018

1 reference

In silico predictions of 3D structures of linear and cyclic peptides with natural and non-proteinogenic residues

21 January 2018

1 reference

Improved PEP-FOLD Approach for Peptide and Miniprotein Structure Prediction.

21 January 2018

1 reference

PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure

21 January 2018

1 reference

Bayesian adaptive sequence alignment algorithms

21 January 2018

1 reference

Detecting protein candidate fragments using a structural alphabet profile comparison approach.

21 January 2018

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

SA-Search: a web tool for protein structure mining based on a Structural Alphabet

21 January 2018

1 reference

Fast protein fragment similarity scoring using a Binet-Cauchy kernel.

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/JCC.24422

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27317417 AND SRC:MED&resulttype=core&format=json

journals/jcc/LamiableTT16

14 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference