An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions (Q51525502)

6 April 2018

title

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions (English)

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6 April 2018

author

Adrian E Platts

2

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6 April 2018

Joseph Christopher Pires

18

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6 April 2018

Martin Lysák

22

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Eric Schranz

24

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Stephen I Wright

28

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6 April 2018

Erik van den Bergh

Erik van den Bergh

23

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Robert J Williamson

Robert J Williamson

6

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John R Stinchcombe

John R Stinchcombe

12

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Mathieu Blanchette

29

Mathieu Blanchette

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6 April 2018

19

Karen S Schumaker

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Daniel J. Schoen

13

Daniel J Schoen

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6 April 2018

author name string

Annabelle Haudry

1

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6 April 2018

Emilio Vello

3

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Douglas R Hoen

4

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6 April 2018

Mickael Leclercq

5

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Ewa Forczek

7

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Zoé Joly-Lopez

8

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Joshua G Steffen

9

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Khaled M Hazzouri

10

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Ken Dewar

11

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Xiaowu Wang

14

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Jeremy Schmutz

15

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Christopher D Town

16

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Patrick P Edger

17

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David E Jarvis

20

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Terezie Mandáková

21

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Paul M Harrison

25

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Alan M Moses

26

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Thomas E Bureau

27

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6 April 2018

language of work or name

English

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publication date

30 June 2013

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6 April 2018

published in

Nature Genetics

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6 April 2018

volume

45

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6 April 2018

issue

8

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6 April 2018

page(s)

891-898

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6 April 2018

Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

copyright license

start time

30 June 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Searching for regulatory elements in human noncoding sequences.

1 reference

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

21 January 2018

1 reference

Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing

21 January 2018

1 reference

Ultraconserved Elements in the Human Genome

21 January 2018

1 reference

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

21 January 2018

1 reference

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

21 January 2018

1 reference

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

21 January 2018

1 reference

Sequencing and comparison of yeast species to identify genes and regulatory elements

21 January 2018

1 reference

cis-Regulatory elements and chromatin state coordinately control temporal and spatial expression of FLOWERING LOCUS T in Arabidopsis

21 January 2018

1 reference

How to usefully compare homologous plant genes and chromosomes as DNA sequences

21 January 2018

1 reference

Conserved noncoding sequences (CNSs) in higher plants

21 January 2018

1 reference

Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana

21 January 2018

1 reference

Regulation of imprinted gene expression in Arabidopsis endosperm.

21 January 2018

1 reference

Conserved noncoding sequences in the grasses

21 January 2018

1 reference

Conserved Noncoding Sequences among Cultivated Cereal Genomes Identify Candidate Regulatory Sequence Elements and Patterns of Promoter Evolution[W]

21 January 2018

1 reference

Utility and distribution of conserved noncoding sequences in the grasses

21 January 2018

1 reference

Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation

21 January 2018

1 reference

Large-scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea

21 January 2018

1 reference

Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes

21 January 2018

1 reference

Arabidopsis intragenomic conserved noncoding sequence

21 January 2018

1 reference

The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.

21 January 2018

1 reference

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 January 2018

1 reference

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

21 January 2018

1 reference

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

21 January 2018

1 reference

The genome of the mesopolyploid crop species Brassica rapa

21 January 2018

1 reference

The genome of the extremophile crucifer Thellungiella parvula

21 January 2018

1 reference

Comparative genomics in the Brassicaceae: a family-wide perspective

21 January 2018

1 reference

Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae).

21 January 2018

1 reference

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

21 January 2018

1 reference

Assessing the gene space in draft genomes

21 January 2018

1 reference

Chromosome triplication found across the tribe Brassiceae.

21 January 2018

1 reference

Escape from preferential retention following repeated whole genome duplications in plants

21 January 2018

1 reference

Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

21 January 2018

1 reference

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

21 January 2018

1 reference

Toward a global phylogeny of the Brassicaceae

21 January 2018

1 reference

Comparative analyses of multi-species sequences from targeted genomic regions

21 January 2018

1 reference

Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages

21 January 2018

1 reference

Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy

21 January 2018

1 reference

Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes

21 January 2018

1 reference

What fraction of the human genome is functional?

21 January 2018

1 reference

Detection of nonneutral substitution rates on mammalian phylogenies

21 January 2018

1 reference

Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes

21 January 2018

1 reference

Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

21 January 2018

1 reference

Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila.

21 January 2018

1 reference

Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

21 January 2018

1 reference

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

21 January 2018

1 reference

Whole-genome sequencing of multiple Arabidopsis thaliana populations

21 January 2018

1 reference

Mathematical model for studying genetic variation in terms of restriction endonucleases

21 January 2018

1 reference

On the number of segregating sites in genetical models without recombination

21 January 2018

1 reference

Human genome ultraconserved elements are ultraselected

21 January 2018

1 reference

Purifying selection maintains highly conserved noncoding sequences in Drosophila.

21 January 2018

1 reference

Allopolyploidy--a shaping force in the evolution of wheat genomes

21 January 2018

1 reference

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

21 January 2018

1 reference

Discovering conditional co-regulated protein complexes by integrating diverse data sources

21 January 2018

1 reference

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments

21 January 2018

1 reference

Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis.

21 January 2018

1 reference

microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems

21 January 2018

1 reference

Regulation of small RNA accumulation in the maize shoot apex

21 January 2018

1 reference

Two small regulatory RNAs establish opposing fates of a developmental axis

21 January 2018

1 reference

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

21 January 2018

1 reference

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

21 January 2018

1 reference

Spontaneous deleterious mutation in Arabidopsis thaliana

21 January 2018

1 reference

Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny.

21 January 2018

1 reference

Plant conserved non-coding sequences and paralogue evolution

21 January 2018

1 reference

Identification and characterization of multi-species conserved sequences

21 January 2018

1 reference

Intron size, abundance, and distribution within untranslated regions of genes

21 January 2018

1 reference

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

21 January 2018

1 reference

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

21 January 2018

1 reference

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

21 January 2018

1 reference

Evolution of genome size in Brassicaceae

21 January 2018

1 reference

The dynamic ups and downs of genome size evolution in Brassicaceae

21 January 2018

1 reference

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

21 January 2018

1 reference

De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

1 reference

Secondary evolution of a self-incompatibility locus in the Brassicaceae genus Leavenworthia.

21 January 2018

1 reference

Analysis of plant meiotic chromosomes by chromosome painting

21 January 2018

1 reference

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

21 January 2018

1 reference

Ab initio gene finding in Drosophila genomic DNA

21 January 2018

1 reference

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

21 January 2018

1 reference

Gene finding in novel genomes

21 January 2018

1 reference

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

21 January 2018

1 reference

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

21 January 2018

1 reference

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

21 January 2018

1 reference

Aligning multiple genomic sequences with the threaded blockset aligner

21 January 2018

1 reference

Initial sequencing and comparative analysis of the mouse genome

21 January 2018

1 reference

RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

21 January 2018

1 reference

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

21 January 2018

1 reference

Bio : a set of C libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

21 January 2018

1 reference

BLAT—The BLAST-Like Alignment Tool

21 January 2018

1 reference

12 December 2020

Conservation and functional element discovery in 20 angiosperm plant genomes

1 reference

12 December 2020

Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa

1 reference

12 December 2020

Using cauliflower to find conserved non-coding regions in Arabidopsis

1 reference

12 December 2020

The Reference Genome of the Halophytic Plant Eutrema salsugineum

1 reference

12 December 2020

Identifiers

DOI

10.1038/NG.2684

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6 April 2018

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6 April 2018