PRL-Dock: protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling. (Q51373396)

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30 January 2020

title

PRL-Dock: protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling (English)

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3

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author name string

Meng-Yun Wu

series ordinal

1

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Dao-Qing Dai

series ordinal

2

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language of work or name

English

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publication date

4 June 2012

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volume

80

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issue

9

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page(s)

2137-2153

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A machine learning approach to predicting protein-ligand binding affinity with applications to molecular docking

30 January 2020

cites work

1 reference

A shape descriptor for fast complementarity matching in molecular docking.

21 January 2018

1 reference

Protein-ligand docking: current status and future challenges

21 January 2018

1 reference

Advances and Challenges in Protein-Ligand Docking

21 January 2018

1 reference

Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy

21 January 2018

1 reference

Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation

21 January 2018

1 reference

Development and validation of a genetic algorithm for flexible docking

21 January 2018

1 reference

Surface‐histogram: A new shape descriptor for protein‐protein docking

21 January 2018

1 reference

Ligand docking to proteins with discrete side-chain flexibility

21 January 2018

1 reference

ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility

21 January 2018

1 reference

Minimal ensembles of side chain conformers for modeling protein-protein interactions

21 January 2018

1 reference

RosettaLigand docking with full ligand and receptor flexibility

21 January 2018

1 reference

FlexE: efficient molecular docking considering protein structure variations.

21 January 2018

1 reference

Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.

21 January 2018

1 reference

Graph-theoretic techniques for macromolecular docking

21 January 2018

1 reference

$F^2$Dock: Fast Fourier Protein-Protein Docking

21 January 2018

1 reference

Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse, points in docking

21 January 2018

1 reference

A geometry-based suite of molecular docking processes

21 January 2018

1 reference

Context shapes: Efficient complementary shape matching for protein-protein docking.

21 January 2018

1 reference

Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.

21 January 2018

1 reference

Fast drug-receptor mapping by site-directed distances: a novel method of predicting new pharmacological leads

21 January 2018

1 reference

A fast protein-ligand docking algorithm based on hydrogen bond matching and surface shape complementarity

21 January 2018

1 reference

Towards improving compound selection in structure-based virtual screening

21 January 2018

1 reference

Evaluation of the FLEXX incremental construction algorithm for protein-ligand docking

21 January 2018

1 reference

Improved protein-ligand docking using GOLD

21 January 2018

1 reference

A fast flexible docking method using an incremental construction algorithm.

21 January 2018

1 reference

Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes

21 January 2018

1 reference

Further development and validation of empirical scoring functions for structure-based binding affinity prediction

21 January 2018

1 reference

DrugScore(CSD)-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction

21 January 2018

1 reference

Robust point matching for nonrigid shapes by preserving local neighborhood structures

21 January 2018

1 reference

A solution for the best rotation to relate two sets of vectors

21 January 2018

1 reference

A discussion of the solution for the best rotation to relate two sets of vectors

21 January 2018

1 reference

Searching protein three-dimensional structures in faster than linear time

21 January 2018

1 reference

PocketAlign a novel algorithm for aligning binding sites in protein structures.

21 January 2018

1 reference

Prediction of interacting single-stranded RNA bases by protein-binding patterns

21 January 2018

1 reference

A new test set for validating predictions of protein-ligand interaction.

21 January 2018

1 reference

Comparative evaluation of 11 scoring functions for molecular docking

21 January 2018

1 reference

Toward a robust search method for the protein-drug docking problem

21 January 2018

1 reference

PSI-DOCK: towards highly efficient and accurate flexible ligand docking.

21 January 2018

1 reference

Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature

21 January 2018

1 reference

Hydrogen bonding in globular proteins

21 January 2018

1 reference

UCSF Chimera--a visualization system for exploratory research and analysis

21 January 2018

1 reference

Principles of docking: An overview of search algorithms and a guide to scoring functions

21 January 2018

1 reference

New approach to molecular docking and its application to virtual screening of chemical databases

21 January 2018

1 reference

7 December 2024

https://opencitations.net/index/api/v1/citations/10.1021/CI990440D

Identifiers

DOI

10.1002/PROT.24104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22544808 AND SRC:MED&resulttype=core&format=json

30 January 2020

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