Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity (Q51211225)

15 June 2018

title

Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity (English)

1 reference

15 June 2018

1 reference

Surendra S Negi

1

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15 June 2018

Werner Braun

series ordinal

2

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15 June 2018

language of work or name

English

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publication date

1 April 2017

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15 June 2018

number of pages

7

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inferred from page(s)

published in

Bioinformatics

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15 June 2018

volume

33

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15 June 2018

issue

7

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15 June 2018

page(s)

1014-1020

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15 June 2018

Conformational IgE epitopes of peanut allergens Ara h 2 and Ara h 6.

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Molecular Allergen-Specific IgE Assays as a Complement to Allergen Extract-Based Sensitization Assessment

16 June 2018

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Vig r 6, the cytokinin-specific binding protein from mung bean (Vigna radiata) sprouts, cross-reacts with Bet v 1-related allergens and binds IgE from birch pollen allergic patients' sera

16 June 2018

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Structure of allergens and structure based epitope predictions.

16 June 2018

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16 June 2018

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16 June 2018

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16 June 2018

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Validation of a phage display and computational algorithm by mapping a conformational epitope of Bla g 2.

16 June 2018

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Sensitization prevalence, antibody cross-reactivity and immunogenic peptide profile of Api g 2, the non-specific lipid transfer protein 1 of celery

16 June 2018

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16 June 2018

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16 June 2018

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Automated detection of conformational epitopes using phage display Peptide sequences

16 June 2018

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High-affinity IgE recognition of a conformational epitope of the major respiratory allergen Phl p 2 as revealed by X-ray crystallography

16 June 2018

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Identification of B-cell epitopes of Bet v 1 involved in cross-reactivity with food allergens

16 June 2018

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Structural analysis of linear and conformational epitopes of allergens

16 June 2018

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Structures of two major allergens, Bla g 4 and Per a 4, from cockroaches and their IgE binding epitopes

16 June 2018

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16 June 2018

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Genomic characterization of putative allergen genes in peach/almond and their synteny with apple

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Epitope analysis of peanut allergen Ara h1 with oligoclonal IgM antibody from human B-lymphoblastoid cells

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

The property distance index PD predicts peptides that cross-react with IgE antibodies

16 June 2018

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Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes.

16 June 2018

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Food contact hypersensitivity syndrome: the mucosal contact urticaria paradigm.

16 June 2018

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Crystal structure of a dimerized cockroach allergen Bla g 2 complexed with a monoclonal antibody

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Predicting linear B-cell epitopes using string kernels

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Mimotope mapping as a complementary strategy to define allergen IgE-epitopes: peach Pru p 3 allergen as a model

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Molecular interactions between a recombinant IgE antibody and the beta-lactoglobulin allergen

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Pepitope: epitope mapping from affinity-selected peptides

16 June 2018

1 reference

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InterProSurf: a web server for predicting interacting sites on protein surfaces

16 June 2018

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Cross-reactivity of pollen allergens: impact on allergen immunotherapy

16 June 2018

1 reference

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Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces

16 June 2018

1 reference

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Bioinformatics applied to allergy: allergen databases, from collecting sequence information to data integration. The Allergome platform as a model

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Identification of a B-cell epitope of hyaluronidase, a major bee venom allergen, from its crystal structure in complex with a specific Fab

16 June 2018

1 reference

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Assessment of allergen cross-reactivity

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

How reliable is the structural prediction of IgE-binding epitopes of allergens? The case study of plant lipid transfer proteins.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Structural bioinformatic approaches to understand cross-reactivity

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Improved method for predicting linear B-cell epitopes

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

A novel approach for investigation of specific and cross-reactive IgE epitopes on Bet v 1 and homologous food allergens in individual patients

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Mimotopes identify conformational epitopes on parvalbumin, the major fish allergen

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Genetically modified crops and allergenicity

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Molecular modelling of the major peanut allergen Ara h 1 and other homotrimeric allergens of the cupin superfamily: a structural basis for their IgE-binding cross-reactivity.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Homology modelling of the major peanut allergen Ara h 2 and surface mapping of IgE-binding epitopes.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Purification and immunoglobulin E-binding properties of peanut allergen Ara h 6: evidence for cross-reactivity with Ara h 2.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Allergic cross-reactivity: from gene to the clinic.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Dominating IgE-binding epitope of Bet v 1, the major allergen of birch pollen, characterized by X-ray crystallography and site-directed mutagenesis

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

SDAP: database and computational tools for allergenic proteins

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Current understanding of cross-reactivity of food allergens and pollen

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Cross-reactivity of IgE antibodies to allergens

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Allergen mimotopes for 3-dimensional epitope search and induction of antibodies inhibiting human IgE.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Structural biology of allergens

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Dominant epitopes and allergic cross-reactivity: complex formation between a Fab fragment of a monoclonal murine IgG antibody and the major allergen from birch pollen Bet v 1

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Peptide mimotopes displayed by phage inhibit antibody binding to bet v 1, the major birch pollen allergen, and induce specific IgG response in mice.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Biochemical and structural analysis of the IgE binding sites on ara h1, an abundant and highly allergenic peanut protein.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

The molecular basis for allergen cross-reactivity: crystal structure and IgE-epitope mapping of birch pollen profilin

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

X-ray and NMR structure of Bet v 1, the origin of birch pollen allergy

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Using the FASTA program to search protein and DNA sequence databases.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Continuous and discontinuous protein antigenic determinants

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Prediction of IgE-binding epitopes by means of allergen surface comparison and correlation to cross-reactivity

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

IgE cross-reactivity between the major peanut allergen Ara h 2 and tree nut allergens.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Identification of IgE-binding epitopes of the major peach allergen Pru p 3.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Biological activity of IgE specific for cross-reactive carbohydrate determinants

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Mapping Epitope Structure and Activity: From One-Dimensional Prediction to Four-Dimensional Description of Antigenic Specificity

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860227

Specific IgE to cross-reactive carbohydrate determinants strongly affect the in vitro diagnosis of allergic diseases

14 August 2018

1 reference

12 December 2020

The maize major allergen, which is responsible for food-induced allergic reactions, is a lipid transfer protein

1 reference

12 December 2020

Allergen Immunotherapy--An Old Friend Coming of Age

1 reference

12 December 2020

Structural biology of allergens

1 reference

12 December 2020

10.1093/BIOINFORMATICS/BTW767

Identifiers

DOI

1 reference

15 June 2018

journals/bioinformatics/NegiB17

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_gioe2hhjpnhlbnfwj7lmkg6lty

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gioe2hhjpnhlbnfwj7lmkg6lty

24 November 2022

mapped directly with Wikidata item

PMC publication ID

5860227

1 reference

15 June 2018

PubMed publication ID

28062447

1 reference

15 June 2018