Underwound DNA under Tension: Structure, Elasticity, and Sequence-Dependent Behaviors (Q50172624)

26 February 2018

title

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors (English)

1 reference

26 February 2018

Underwound DNA under Tension: Structure, Elasticity, and Sequence-Dependent Behaviors (English)

1 reference

https://api.crossref.org/works/10.1103/PHYSREVLETT.107.108102

14 December 2024

author name string

Scott Forth

series ordinal

2

1 reference

26 February 2018

Maxim Y. Sheinin

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21981534

14 December 2024

John F. Marko

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21981534

14 December 2024

Michelle D. Wang

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21981534

14 December 2024

language of work or name

English

0 references

publication date

1 September 2011

1 reference

26 February 2018

2 September 2011

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21981534

full work available at URL

14 December 2024

https://link.aps.org/accepted/10.1103/PhysRevLett.107.108102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21981534

https://europepmc.org/articles/PMC3201814

14 December 2024

file format

HyperText Markup Language

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21981534

https://europepmc.org/articles/PMC3201814?pdf=render

14 December 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21981534

http://link.aps.org/accepted/10.1103/PhysRevLett.107.108102

14 December 2024

1 reference

https://api.crossref.org/works/10.1103/PHYSREVLETT.107.108102

http://link.aps.org/article/10.1103/PhysRevLett.107.108102

14 December 2024

1 reference

https://api.crossref.org/works/10.1103/PHYSREVLETT.107.108102

http://harvest.aps.org/v2/journals/articles/10.1103/PhysRevLett.107.108102/fulltext

14 December 2024

1 reference

https://api.crossref.org/works/10.1103/PHYSREVLETT.107.108102

14 December 2024

published in

Physical Review Letters

1 reference

26 February 2018

volume

107

1 reference

26 February 2018

issue

10

1 reference

26 February 2018

page(s)

108102

1 reference

26 February 2018

Passive torque wrench and angular position detection using a single-beam optical trap

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Twist-stretch coupling and phase transition during DNA supercoiling

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Magnetic tweezers measurement of single molecule torque.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Supercoil-driven DNA structures regulate genetic transactions

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Happy Hollidays: 40th anniversary of the Holliday junction

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Structural transitions and elasticity from torque measurements on DNA.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Unpaired bases in superhelical DNA: kinetic evidence

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Stretched and overwound DNA forms a Pauling-like structure with exposed bases

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Homologous pairing in stretched supercoiled DNA

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Behavior of supercoiled DNA.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Torsional directed walks, entropic elasticity, and DNA twist stiffness

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Stretching DNA with optical tweezers

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

The elasticity of a single supercoiled DNA molecule

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Detection of localized DNA flexibility

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Chain flexibility and hydrodynamics of the B and Z forms of poly(dG-dC).poly(dG-dC).

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

The twisted circular form of polyoma viral DNA

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

The ease of DNA unwinding as a determinant of initiation at yeast replication origins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

RNA polymerase unwinds an 11-base pair segment of a phage T7 promoter

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Torsional stress and local denaturation in supercoiled DNA

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Extensive unwinding of the plasmid template during staged enzymatic initiation of DNA replication from the origin of the Escherichia coli chromosome.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Torque and dynamics of linking number relaxation in stretched supercoiled DNA.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Optical torque wrench: angular trapping, rotation, and torque detection of quartz microparticles

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Force and velocity measured for single molecules of RNA polymerase.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201814

Structural transitions in DNA driven by external force and torque

14 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21981534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Stretching single stranded DNA, a model polyelectrolyte

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21981534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

1 reference

26 February 2018

PMC publication ID

3201814

1 reference

26 February 2018

1 reference

26 February 2018