Predicting transcription factor affinities to DNA from a biophysical model (Q48424525)

11 February 2018

title

Predicting transcription factor affinities to DNA from a biophysical model (English)

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4

Martin Vingron

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author name string

Helge G Roider

series ordinal

1

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Aditi Kanhere

series ordinal

2

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Thomas Manke

series ordinal

3

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language of work or name

English

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publication date

10 November 2006

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11 February 2018

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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volume

23

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issue

2

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page(s)

134-141

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Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

cites work

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTL565

Aft2p, a novel iron-regulated transcription activator that modulates, with Aft1p, intracellular iron use and resistance to oxidative stress in yeast

21 January 2018

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Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

21 January 2018

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What are DNA sequence motifs?

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https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTL565

A biophysical approach to transcription factor binding site discovery

21 January 2018

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https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTL565

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

21 January 2018

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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

21 January 2018

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Binding of the glucose-dependent Mig1p repressor to the GAL1 and GAL4 promoters in vivo: regulationby glucose and chromatin structure.

21 January 2018

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DNAase footprinting a simple method for the detection of protein-DNA binding specificity

21 January 2018

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Distortion of the DNA double helix by RAP1 at silencers and multiple telomeric binding sites.

21 January 2018

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Explicit equilibrium modeling of transcription-factor binding and gene regulation.

21 January 2018

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Transcriptional regulatory code of a eukaryotic genome

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Transcriptional regulatory networks in Saccharomyces cerevisiae

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TRANSFAC: transcriptional regulation, from patterns to profiles

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Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

21 January 2018

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The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress

21 January 2018

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

21 January 2018

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Targets of the Gal4 transcription activator in functional transcription complexes.

21 January 2018

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In vivo DNA-binding properties of a yeast transcription activator protein

21 January 2018

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DNA binding sites: representation and discovery

21 January 2018

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Extensive low-affinity transcriptional interactions in the yeast genome

21 January 2018

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Regulated nuclear translocation of the Mig1 glucose repressor

21 January 2018

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On the specificity of DNA-protein interactions

21 January 2018

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Applied bioinformatics for the identification of regulatory elements

21 January 2018

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Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit.

21 January 2018

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Structure of yeast regulatory gene LEU3 and evidence that LEU3 itself is under general amino acid control

21 January 2018

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10.1093/BIOINFORMATICS/BTL565

21 January 2018

Identifiers

DOI

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11 February 2018

journals/bioinformatics/RoiderKMV07

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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11 February 2018