Mathematical modelling of eukaryotic DNA replication. (Q47806318)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

19 January 2020

title

Mathematical modelling of eukaryotic DNA replication (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

19 January 2020

main subject

mathematical modelling

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1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

19 January 2020

author name string

Arach Goldar

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

19 January 2020

publication date

1 January 2010

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

19 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

19 January 2020

volume

18

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

19 January 2020

issue

1

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19 January 2020

page(s)

147-161

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20205354 AND SRC:MED&resulttype=core&format=json

Nucleation and growth in one dimension. I. The generalized Kolmogorov-Johnson-Mehl-Avrami model

19 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1007/S10577-009-9092-4

Physical interactions among Mcm proteins and effects of Mcm dosage on DNA replication in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-009-9092-4

Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-009-9092-4

How Xenopus laevis embryos replicate reliably: investigating the random-completion problem.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-009-9092-4

Computational methods to study kinetics of DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-009-9092-4

Reconstructing DNA replication kinetics from small DNA fragments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-009-9092-4

The structure and function of yeast ARS elements

21 January 2018

1 reference

12 December 2020

Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication.

1 reference

12 December 2020

Sequence analysis of ARS elements in fission yeast

1 reference

12 December 2020

Replication fork density increases during DNA synthesis in X. laevis egg extracts

1 reference

12 December 2020

Replication dynamics of the yeast genome.

1 reference

12 December 2020

Chromatin decondensation in S-phase involves recruitment of Cdk2 by Cdc45 and histone H1 phosphorylation

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12 December 2020

Regulated chromosomal DNA replication in the absence of a nucleus

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12 December 2020

DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts.

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12 December 2020

Chromosomal replication initiates and terminates at random sequences but at regular intervals in the ribosomal DNA of Xenopus early embryos

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12 December 2020

On the mechanism of DNA replication in mammalian chromosomes

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12 December 2020

Persistence length of chromatin determines origin spacing in Xenopus early-embryo DNA replication: quantitative comparisons between theory and experiment.

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12 December 2020

Mapping of early firing origins on a replication profile of budding yeast

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12 December 2020

DNA replication origins in the Schizosaccharomyces pombe genome

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12 December 2020

Kinetic model of DNA replication in eukaryotic organisms

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12 December 2020

A model for the spatiotemporal organization of DNA replication in Saccharomyces cerevisiae.

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12 December 2020

The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI

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12 December 2020

Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells

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12 December 2020

Regulation of DNA replication by the S-phase DNA damage checkpoint

1 reference

12 December 2020

Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos

1 reference

12 December 2020

Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem.

1 reference

12 December 2020

MCM2-7 complexes bind chromatin in a distributed pattern surrounding the origin recognition complex in Xenopus egg extracts.

1 reference

12 December 2020

Replication in context: dynamic regulation of DNA replication patterns in metazoans

1 reference

12 December 2020

Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site

1 reference

12 December 2020

Plasmid replication in Xenopus eggs and egg extracts: a 2D gel electrophoretic analysis

1 reference

12 December 2020

Cell cycle regulation of the replication licensing system: involvement of a Cdk-dependent inhibitor

1 reference

12 December 2020

Replication profile of Saccharomyces cerevisiae chromosome VI

1 reference

12 December 2020

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast

1 reference

12 December 2020

HowXenopus LaevisReplicates DNA Reliably even though Its Origins of Replication are Located and Initiated Stochastically

1 reference

12 December 2020

CLB5 and CLB6, a new pair of B cyclins involved in DNA replication in Saccharomyces cerevisiae

1 reference

12 December 2020

In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences

1 reference

12 December 2020

CpG methylation of DNA restricts prereplication complex assembly in Xenopus egg extracts.

1 reference

12 December 2020

Preventing re-replication of chromosomal DNA.

1 reference

12 December 2020

Transition in specification of embryonic metazoan DNA replication origins

1 reference

12 December 2020

Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

1 reference

12 December 2020

The ATPase activity of MCM2-7 is dispensable for pre-RC assembly but is required for DNA unwinding

1 reference

12 December 2020

Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus

1 reference

12 December 2020

Genome-wide distribution of DNA replication origins at A T-rich islands in Schizosaccharomyces pombe

1 reference

12 December 2020

OriDB: a DNA replication origin database

1 reference

12 December 2020

CLB5-dependent activation of late replication origins in S. cerevisiae.

1 reference

12 December 2020

Stochastic hybrid modeling of DNA replication across a complete genome

1 reference

12 December 2020

Genome-wide characterization of fission yeast DNA replication origins

1 reference

12 December 2020

Control of replication origin density and firing time in Xenopus egg extracts: role of a caffeine-sensitive, ATR-dependent checkpoint.

1 reference

12 December 2020

Control of DNA replication by anomalous reaction-diffusion kinetics

1 reference

12 December 2020

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

1 reference

12 December 2020

Genome-wide identification of replication origins in yeast by comparative genomics.

1 reference

12 December 2020

Interaction between the origin recognition complex and the replication licensing system in Xenopus.

1 reference

12 December 2020

DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI.

1 reference

12 December 2020

DNA replication origins fire stochastically in fission yeast

1 reference

12 December 2020

Nucleation and growth in one dimension. II. Application to DNA replication kinetics

1 reference

12 December 2020

Replication origins in Xenopus egg extract Are 5-15 kilobases apart and are activated in clusters that fire at different times

1 reference

12 December 2020

Replication in hydroxyurea: it's a matter of time

1 reference

12 December 2020

Interactions of human nuclear proteins P1Mcm3 and P1Cdc46

1 reference

12 December 2020

Global profiling of DNA replication timing and efficiency reveals that efficient replication/firing occurs late during S-phase in S. pombe

1 reference

12 December 2020

Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

1 reference

12 December 2020

Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication

1 reference

12 December 2020

Three ARS elements contribute to the ura4 replication origin region in the fission yeast, Schizosaccharomyces pombe.

1 reference

12 December 2020

Dormant origins licensed by excess Mcm2-7 are required for human cells to survive replicative stress.

1 reference

12 December 2020

Identification and characterization of a complex chromosomal replication origin inSchizosaccharomyces pombe

1 reference

12 December 2020

Right place, right time, and only once: replication initiation in metazoans

1 reference

12 December 2020

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

1 reference

12 December 2020

A dynamic stochastic model for DNA replication initiation in early embryos

1 reference

12 December 2020

Excess Mcm2-7 license dormant origins of replication that can be used under conditions of replicative stress.

1 reference

12 December 2020

DNA replication initiates at multiple sites on plasmid DNA in Xenopus egg extracts.

1 reference

12 December 2020

A model for DNA replication showing how dormant origins safeguard against replication fork failure.

1 reference

12 December 2020

ATR and ATM regulate the timing of DNA replication origin firing

1 reference

12 December 2020

Electron microscopic analysis of chromatin replication in the cellular blastoderm drosophila melanogaster embryo

1 reference

12 December 2020

Universal temporal profile of replication origin activation in eukaryotes

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12 December 2020

Aphidicolin triggers a block to replication origin firing in Xenopus egg extracts

1 reference

12 December 2020

Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development.

1 reference

12 December 2020

The temporal program of chromosome replication: genomewide replication in clb5{Delta} Saccharomyces cerevisiae

1 reference

12 December 2020

Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6.

1 reference

12 December 2020