Elucidating the editome: bioinformatics approaches for RNA editing detection (Q47777124)

5 February 2018

title

Elucidating the editome: bioinformatics approaches for RNA editing detection (English)

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5 February 2018

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Maria Angela Diroma

1

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Ernesto Picardi

object named as

Ernesto Picardi

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4

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Graziano Pesole

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3

object named as

Graziano Pesole

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5 February 2018

author name string

Loredana Ciaccia

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2

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5 February 2018

publication date

11 October 2017

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5 February 2018

Briefings in Bioinformatics

published in

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5 February 2018

Functions and mechanisms of RNA editing

cites work

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Deciphering the functions and regulation of brain-enriched A-to-I RNA editing

21 January 2018

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21 January 2018

The ADAR protein family

1 reference

Adenosine-to-inosine RNA editing

21 January 2018

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Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA

21 January 2018

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A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains

21 January 2018

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APOBEC‐1‐mediated RNA editing

21 January 2018

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Widespread RNA and DNA sequence differences in the human transcriptome.

21 January 2018

1 reference

Lack of evidence for existence of noncanonical RNA editing

21 January 2018

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Identification of human RNA editing sites: A historical perspective

21 January 2018

1 reference

RNA editing in brain controls a determinant of ion flow in glutamate-gated channels

21 January 2018

1 reference

Regulation of serotonin-2C receptor G-protein coupling by RNA editing

21 January 2018

1 reference

Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease

21 January 2018

1 reference

Functions and regulation of RNA editing by ADAR deaminases

21 January 2018

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A-to-I RNA editing and human disease

21 January 2018

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DARNED: a DAtabase of RNa EDiting in humans

21 January 2018

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RADAR: a rigorously annotated database of A-to-I RNA editing

21 January 2018

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REDItools: high-throughput RNA editing detection made easy

21 January 2018

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RES-Scanner: a software package for genome-wide identification of RNA-editing sites

21 January 2018

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Genome sequence-independent identification of RNA editing sites

21 January 2018

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JACUSA: site-specific identification of RNA editing events from replicate sequencing data

21 January 2018

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PAI: Predicting adenosine to inosine editing sites by using pseudo nucleotide compositions

21 January 2018

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Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

21 January 2018

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A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

21 January 2018

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A genome-wide map of hyper-edited RNA reveals numerous new sites

21 January 2018

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dbSNP: the NCBI database of genetic variation

21 January 2018

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A survey of best practices for RNA-seq data analysis

21 January 2018

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Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants

21 January 2018

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

21 January 2018

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The impact of read length on quantification of differentially expressed genes and splice junction detection

21 January 2018

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Identification of widespread ultra-edited human RNAs.

21 January 2018

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High-resolution transcriptome analysis with long-read RNA sequencing

21 January 2018

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Transcriptome analysis by strand-specific sequencing of complementary DNA.

21 January 2018

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A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods

21 January 2018

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Strand-Specific RNA-Seq Provides Greater Resolution of Transcriptome Profiling.

21 January 2018

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Trimmomatic: a flexible trimmer for Illumina sequence data

21 January 2018

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Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

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NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

21 January 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

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Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

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Accurate identification of human Alu and non-Alu RNA editing sites

21 January 2018

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Fast and SNP-tolerant detection of complex variants and splicing in short reads

21 January 2018

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STAR: ultrafast universal RNA-seq aligner

21 January 2018

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HISAT: a fast spliced aligner with low memory requirements

21 January 2018

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The Sequence Alignment/Map format and SAMtools

21 January 2018

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Single-cell transcriptomics reveals specific RNA editing signatures in the human brain

21 January 2018

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Comparative analysis of RNA sequencing methods for degraded or low-input samples

21 January 2018

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A novel computational strategy to identify A-to-I RNA editing sites by RNA-Seq data: de novo detection in human spinal cord tissue

21 January 2018

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Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

21 January 2018

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A global reference for human genetic variation

21 January 2018

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Integrating common and rare genetic variation in diverse human populations

21 January 2018

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Identifying RNA editing sites in miRNAs by deep sequencing

21 January 2018

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Controlling the false discovery rate in behavior genetics research

21 January 2018

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Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

21 January 2018

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The Genotype-Tissue Expression (GTEx) project

21 January 2018

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

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Profiling RNA editing in human tissues: towards the inosinome Atlas

21 January 2018

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U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line

21 January 2018

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Systematic evaluation of spliced alignment programs for RNA-seq data

21 January 2018

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21 January 2018

Identifiers

DOI

10.1093/BIB/BBX129

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5 February 2018

DBLP publication ID

journals/bib/DiromaCPP19

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DBLP Dataset 2021-01-02

28 January 2021

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5 February 2018