Reassessing the Structure and Function Relationship of the O2 Sensing Transcription Factor FNR. (Q47679089)

PubMed publication ID

28990402

4 February 2018

http://europepmc.org/abstract/MED/28990402

title

Reassessing the Structure and Function Relationship of the O2 Sensing Transcription Factor FNR (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6217745&resulttype=core&format=json

12 May 2020

author name string

Erin L Mettert

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6217745&resulttype=core&format=json

12 May 2020

Patricia J Kiley

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6217745&resulttype=core&format=json

12 May 2020

publication date

7 October 2017

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PubMed publication ID

28990402

4 February 2018

http://europepmc.org/abstract/MED/28990402

published in

Antioxidants & Redox Signaling

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6217745&resulttype=core&format=json

12 May 2020

volume

29

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12 May 2020

issue

18

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12 May 2020

page(s)

1830-1840

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Transcription factor distribution in Escherichia coli: studies with FNR protein.

12 May 2020

cites work

1 reference

12 December 2020

Transcription activation by the Escherichia coli cyclic AMP receptor protein: determinants within activating region 3.

1 reference

12 December 2020

Characterization of FNR* mutant proteins indicates two distinct mechanisms for altering oxygen regulation of the Escherichia coli transcription factor FNR

1 reference

12 December 2020

FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3

1 reference

12 December 2020

Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 A resolution

1 reference

12 December 2020

Activating transcription in bacteria.

1 reference

12 December 2020

Interconversion of the DNA-binding specificities of two related transcription regulators, CRP and FNR.

1 reference

12 December 2020

ClpXP-dependent proteolysis of FNR upon loss of its O2-sensing [4Fe-4S] cluster

1 reference

12 December 2020

Regulation of FNR dimerization by subunit charge repulsion.

1 reference

12 December 2020

The Protein Data Bank

1 reference

12 December 2020

Substitution of Leucine 28 with Histidine in theEscherichia coliTranscription Factor FNR Results in Increased Stability of the [4Fe-4S]2 Cluster to Oxygen

1 reference

12 December 2020

Reversible cycling between cysteine persulfide-ligated [2Fe-2S] and cysteine-ligated [4Fe-4S] clusters in the FNR regulatory protein.

1 reference

12 December 2020

Impact of Anaerobiosis on Expression of the Iron-Responsive Fur and RyhB Regulons.

1 reference

12 December 2020

Bacillus cereus Fnr binds a [4Fe-4S] cluster and forms a ternary complex with ResD and PlcR.

1 reference

12 December 2020

Homology between CAP and Fnr, a regulator of anaerobic respiration in Escherichia coli

1 reference

12 December 2020

Dissecting the role of the N-terminal region of the Escherichia coli global transcription factor FNR.

1 reference

12 December 2020

Aspartate 141 Is the Fourth Ligand of the Oxygen-sensing [4Fe-4S]2 Cluster of Bacillus subtilis Transcriptional Regulator Fnr

1 reference

12 December 2020

Contributions of [4Fe-4S]-FNR and integration host factor to fnr transcriptional regulation

1 reference

12 December 2020

Transcription activation by catabolite activator protein (CAP)

1 reference

12 December 2020

The crystal structure of the global anaerobic transcriptional regulator FNR explains its extremely fine-tuned monomer-dimer equilibrium

1 reference

12 December 2020

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

1 reference

12 December 2020

Binding to DNA protects Neisseria meningitidis fumarate and nitrate reductase regulator (FNR) from oxygen

1 reference

12 December 2020

Cyclic-AMP and bacterial cyclic-AMP receptor proteins revisited: adaptation for different ecological niches

1 reference

12 December 2020

Iron-sulfur clusters as biological sensors: the chemistry of reactions with molecular oxygen and nitric oxide

1 reference

12 December 2020

Transcription activation at class I FNR-dependent promoters: identification of the activating surface of FNR and the corresponding contact site in the C-terminal domain of the RNA polymerase alpha subunit

1 reference

12 December 2020

DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen.

1 reference

12 December 2020

Characterization of activating region 3 from Escherichia coli FNR

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12 December 2020

In vitro analysis of a constitutively active mutant form of the Escherichia coli global transcription factor FNR

1 reference

12 December 2020

Mutants of Escherichia coli K12 unable to use fumarate as an anaerobic electron acceptor

1 reference

12 December 2020

Posttranslational control of transcription factor FixK2, a key regulator for the Bradyrhizobium japonicum-soybean symbiosis

1 reference

12 December 2020

Transcription activation by FNR: evidence for a functional activating region 2.

1 reference

12 December 2020

FNR is a direct oxygen sensor having a biphasic response curve

1 reference

12 December 2020

Analysis of interactions between Activating Region 1 of Escherichia coli FNR protein and the C-terminal domain of the RNA polymerase alpha subunit: use of alanine scanning and suppression genetics.

1 reference

12 December 2020

Mössbauer spectroscopy as a tool for the study of activation/inactivation of the transcription regulator FNR in whole cells of Escherichia coli

1 reference

12 December 2020

Influence of association state and DNA binding on the O₂-reactivity of [4Fe-4S] fumarate and nitrate reduction (FNR) regulator

1 reference

12 December 2020

Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity.

1 reference

12 December 2020

Mass spectrometric identification of intermediates in the O2-driven [4Fe-4S] to [2Fe-2S] cluster conversion in FNR.

1 reference

12 December 2020

Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs

1 reference

12 December 2020

A novel promoter architecture for microaerobic activation by the anaerobic transcription factor FNR

1 reference

12 December 2020

Bacterial adaptation of respiration from oxic to microoxic and anoxic conditions: redox control

1 reference

12 December 2020

Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL and NarP during anaerobic growth of Escherichia coli: new insights into microbial physiology

1 reference

12 December 2020

Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR.

1 reference

12 December 2020

Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function

1 reference

12 December 2020

Determining the control circuitry of redox metabolism at the genome-scale

1 reference

12 December 2020

In vivo and in vitro mutants of FNR the anaerobic transcriptional regulator of E. coli.

1 reference

12 December 2020

The Structure of Bradyrhizobium japonicum Transcription Factor FixK2 Unveils Sites of DNA Binding and Oxidation

1 reference

12 December 2020

Inactivation of the FNR protein of Escherichia coli by targeted mutagenesis in the N-terminal region.

1 reference

12 December 2020

Mutations in fnr that alter anaerobic regulation of electron transport-associated genes in Escherichia coli.

1 reference

12 December 2020

Bacillus subtilis Fnr senses oxygen via a [4Fe-4S] cluster coordinated by three cysteine residues without change in the oligomeric state.

1 reference

12 December 2020

Kinetic analysis of the oxidative conversion of the [4Fe-4S]2 cluster of FNR to a [2Fe-2S]2 Cluster

1 reference

12 December 2020

Transcription regulation by tandem-bound FNR at Escherichia coli promoters.

1 reference

12 December 2020

Bacterial sensors of oxygen

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12 December 2020

Spacing requirements for transcription activation by Escherichia coli FNR protein

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12 December 2020

Transcriptional regulation by cAMP and its receptor protein

1 reference

12 December 2020

Identification of a surface of FNR overlapping activating region 1 that is required for repression of gene expression

1 reference

12 December 2020

Structural overview on the allosteric activation of cyclic AMP receptor protein

1 reference

12 December 2020

The impact of O(2) on the Fe-S cluster biogenesis requirements of Escherichia coli FNR.

1 reference

12 December 2020

Iron-sulfur protein folds, iron-sulfur chemistry, and evolution.

1 reference

12 December 2020

The activity of the Escherichia coli transcription factor FNR is regulated by a change in oligomeric state.

1 reference

12 December 2020

Role of activating region 1 of Escherichia coli FNR protein in transcription activation at class II promoters.

1 reference

12 December 2020

Model-building of Fnr and FixK DNA-binding domains suggests a basis for specific DNA recognition

1 reference

12 December 2020

Characterization of the dimerization domain in the FNR transcription factor.

1 reference

12 December 2020

The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium

1 reference

12 December 2020

Association of a polynuclear iron-sulfur center with a mutant FNR protein enhances DNA binding

1 reference

12 December 2020

Control of FNR function of Escherichia coli by O2 and reducing conditions.

1 reference

12 December 2020

Definition of nitrite and nitrate response elements at the anaerobically inducible Escherichia coli nirB promoter: interactions between FNR and NarL.

1 reference

12 December 2020

Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster

1 reference

12 December 2020

Transcription activation by Escherichia coli FNR protein: similarities to, and differences from, the CRP paradigm

1 reference

12 December 2020

Comprehensive computational analysis of bacterial CRP/FNR superfamily and its target motifs reveals stepwise evolution of transcriptional networks.

1 reference

12 December 2020

Reconstitution of the [4Fe-4S] cluster in FNR and demonstration of the aerobic-anaerobic transcription switch in vitro

1 reference

12 December 2020

Regulation of cytochrome bd expression in the obligate aerobe Azotobacter vinelandii by CydR (Fnr). Sensitivity to oxygen, reactive oxygen species, and nitric oxide

1 reference

12 December 2020

The O2 sensitivity of the transcription factor FNR is controlled by Ser24 modulating the kinetics of [4Fe-4S] to [2Fe-2S] conversion.

1 reference

12 December 2020

Fnr mutants that activate gene expression in the presence of oxygen

1 reference

12 December 2020

Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals

1 reference

12 December 2020

A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth

1 reference

12 December 2020

Reconstruction of the core and extended regulons of global transcription factors

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12 December 2020

Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.

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12 December 2020

Superoxide destroys the [2Fe-2S]2 cluster of FNR from Escherichia coli

1 reference

12 December 2020

FNR and its role in oxygen-regulated gene expression in Escherichia coli

1 reference

12 December 2020

Transcription activation at Escherichia coli FNR-dependent promoters by the gonococcal FNR protein: effects of a novel S18F substitution and comparisons with the corresponding substitution in E. coli FNR.

1 reference

12 December 2020

Additional determinants within Escherichia coli FNR activating region 1 and RNA polymerase alpha subunit required for transcription activation

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12 December 2020

Identifiers

DOI

10.1089/ARS.2017.7365

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6217745&resulttype=core&format=json

12 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6217745&resulttype=core&format=json

12 May 2020

PubMed publication ID

28990402

1 reference