Transcriptome-wide characterization of human cytomegalovirus in natural infection and experimental latency (Q47574967)

1 July 2018

title

Transcriptome-wide characterization of human cytomegalovirus in natural infection and experimental latency (English)

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1 July 2018

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Katie Caviness

2

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Janko Nikolich-Žugich

5

object named as

Janko Nikolich-Žugich

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1 July 2018

Felicia Goodrum

6

object named as

Felicia Goodrum

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1 July 2018

author name string

Shu Cheng

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1 July 2018

Jason Buehler

3

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1 July 2018

Megan Smithey

4

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1 July 2018

language of work or name

English

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publication date

20 November 2017

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1 July 2018

Proceedings of the National Academy of Sciences of the United States of America

published in

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1 July 2018

volume

114

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1 July 2018

issue

49

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1 July 2018

page(s)

E10586-E10595

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1 July 2018

HCMV Displays a Unique Transcriptome of Immunomodulatory Genes in Primary Monocyte-Derived Cell Types

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Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing

3 July 2018

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A Toolbox for Herpesvirus miRNA Research: Construction of a Complete Set of KSHV miRNA Deletion Mutants

3 July 2018

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Cellular defense against latent colonization foiled by human cytomegalovirus UL138 protein

3 July 2018

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The Transcription and Translation Landscapes during Human Cytomegalovirus Infection Reveal Novel Host-Pathogen Interactions

3 July 2018

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3 July 2018

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3 July 2018

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Lytic gene expression is frequent in HSV-1 latent infection and correlates with the engagement of a cell-intrinsic transcriptional response

3 July 2018

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Quantitative temporal viromics: an approach to investigate host-pathogen interaction

3 July 2018

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Antagonistic determinants controlling replicative and latent states of human cytomegalovirus infection

3 July 2018

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Comparison of varicella-zoster virus RNA sequences in human neurons and fibroblasts

3 July 2018

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Aging and cytomegalovirus infection differentially and jointly affect distinct circulating T cell subsets in humans

3 July 2018

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Cytomegalovirus diseases after hematopoietic stem cell transplantation: a mini-review.

3 July 2018

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Regulation of human cytomegalovirus transcription in latency: beyond the major immediate-early promoter

3 July 2018

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Cis and trans acting factors involved in human cytomegalovirus experimental and natural latent infection of CD14 ( ) monocytes and CD34 ( ) cells

3 July 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

3 July 2018

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Decoding human cytomegalovirus

3 July 2018

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A novel human cytomegalovirus locus modulates cell type-specific outcomes of infection

3 July 2018

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Specific capture and whole-genome sequencing of viruses from clinical samples

3 July 2018

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High-resolution human cytomegalovirus transcriptome

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

A framework for variation discovery and genotyping using next-generation DNA sequencing data

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Varicella-Zoster Virus Transcriptome in Latently Infected Human Ganglia

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Experimental human cytomegalovirus latency in CD14 monocytes

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

The Sequence Alignment/Map format and SAMtools

3 July 2018

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Characterization of a novel Golgi apparatus-localized latency determinant encoded by human cytomegalovirus.

3 July 2018

1 reference

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Manifestations of human cytomegalovirus infection: proposed mechanisms of acute and chronic disease.

3 July 2018

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Aspects of human cytomegalovirus latency and reactivation

3 July 2018

1 reference

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During herpes simplex virus type 1 infection of rabbits, the ability to express the latency-associated transcript increases latent-phase transcription of lytic genes

3 July 2018

1 reference

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Human cytomegalovirus sequences expressed in latently infected individuals promote a latent infection in vitro

3 July 2018

1 reference

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Coding potential of laboratory and clinical strains of human cytomegalovirus

3 July 2018

1 reference

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Reevaluation of human cytomegalovirus coding potential.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Human cytomegalovirus gene expression during infection of primary hematopoietic progenitor cells: a model for latency

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Quantitative analysis of latent human cytomegalovirus

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Accumulation of Viral Transcripts and DNA during Establishment of Latency by Herpes Simplex Virus

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Analysis of latent viral gene expression in natural and experimental latency models of human cytomegalovirus and its correlation with histone modifications at a latent promoter

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Unravelling the interaction of human cytomegalovirus with dendritic cells by using SuperSAGE.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Differential outcomes of human cytomegalovirus infection in primitive hematopoietic cell subpopulations

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

The human cytomegalovirus genome revisited: comparison with the chimpanzee cytomegalovirus genome

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5724264

Congenital cytomegalovirus (CMV) epidemiology and awareness

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.1710522114

Viral gene expression during the establishment of human cytomegalovirus latent infection in myeloid progenitor cells

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.1710522114

Cytomegalovirus in solid organ transplantation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29158406

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Congenital cytomegalovirus infection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29158406

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1710522114

1 reference

1 July 2018

PMC publication ID

5724264

1 reference

1 July 2018

PubMed publication ID

29158406

1 reference

1 July 2018