Identification and characterization of a translation arrest motif in VemP by systematic mutational analysis. (Q47215849)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29317498 AND SRC:MED&resulttype=core&format=json

8 April 2020

title

Identification and characterization of a translation arrest motif in VemP by systematic mutational analysis (English)

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8 April 2020

1

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8 April 2020

author name string

Sohei Sakashita

2

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8 April 2020

Jun Ito

3

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8 April 2020

Eiji Ishii

4

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8 April 2020

Yoshinori Akiyama

5

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8 April 2020

language of work or name

English

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publication date

9 January 2018

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Journal of Biological Chemistry

8 April 2020

published in

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8 April 2020

volume

293

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8 April 2020

issue

8

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8 April 2020

page(s)

2915-2926

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Structural and Mechanistic Insights into Protein Translocation

8 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Mechanisms of ribosome stalling by SecM at multiple elongation steps

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria.

26 August 2018

1 reference

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Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Arrest peptides: cis-acting modulators of translation.

26 August 2018

1 reference

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A connecter-like factor, CacA, links RssB/RpoS and the CpxR/CpxA two-component system in Salmonella

26 August 2018

1 reference

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The translational regulatory function of SecM requires the precise timing of membrane targeting.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Structure and function of a membrane component SecDF that enhances protein export

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Recruitment of a species-specific translational arrest module to monitor different cellular processes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

A ribosome-nascent chain sensor of membrane protein biogenesis in Bacillus subtilis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

A role for the two-helix finger of the SecA ATPase in protein translocation.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Structure of a complex of the ATPase SecA and the protein-translocation channel

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

SecY alterations that impair membrane protein folding and generate a membrane stress

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

The long alpha-helix of SecA is important for the ATPase coupling of translocation

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Translation arrest of SecM is essential for the basal and regulated expression of SecA.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

A SecE mutation that modulates SecY-SecE translocase assembly, identified as a specific suppressor of SecY defects

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Roles of the C-terminal end of SecY in protein translocation and viability of Escherichia coli

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

The ribosomal exit tunnel functions as a discriminating gate

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

The Sec protein-translocation pathway.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Secretion monitor, SecM, undergoes self-translation arrest in the cytosol

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Syd, a SecY-interacting protein, excludes SecA from the SecYE complex with an altered SecY24 subunit.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Pro-OmpA derivatives with a His6 tag in their N-terminal "translocation initiation domains" are arrested by Ni2 at an early post-targeting stage of translocation.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

The Cs sec mutants of Escherichia coli reflect the cold sensitivity of protein export itself

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Product of a new gene, syd, functionally interacts with SecY when overproduced in Escherichia coli.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Genetic and molecular characterization of the Escherichia coli secD operon and its products

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

In vitro analysis of the process of translocation of OmpA across the Escherichia coli cytoplasmic membrane. A translocation intermediate accumulates transiently in the absence of the proton motive force.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Characterization of cold-sensitive secY mutants of Escherichia coli

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5827439

Identification of a SecM segment required for export-coupled release from elongation arrest

26 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29317498

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M117.816561

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29317498 AND SRC:MED&resulttype=core&format=json

8 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29317498 AND SRC:MED&resulttype=core&format=json

8 April 2020

PubMed publication ID

29317498

1 reference