Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing (Q46957824)

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scientific article published in February 2014

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English	Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing	scientific article published in February 2014

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scholarly article

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Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

genetic diversity

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based on heuristic

inferred from title

author name string

J D Lozier

1

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Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

publication date

1 February 2014

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Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

Molecular Ecology

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Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

23

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

4

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

788-801

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

Genomics and the future of conservation genetics

1 reference

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When does conservation genetics matter?

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RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

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Rapid SNP discovery and genetic mapping using sequenced RAD markers

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Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

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Plant-pollinator interactions over 120 years: loss of species, co-occurrence, and function

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A comprehensive phylogeny of the bumble bees (Bombus)

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Patterns of widespread decline in North American bumble bees

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Conservation genetics, foraging distance and nest density of the scarce Great Yellow Bumblebee (Bombus distinguendus).

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The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes

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Ascertainment bias in studies of human genome-wide polymorphism.

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The variant call format and VCFtools

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RADSeq: next-generation population genetics

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Genome-wide genetic marker discovery and genotyping using next-generation sequencing

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Special features of RAD Sequencing data: implications for genotyping

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Characterizing genic and nongenic molecular markers: comparison of microsatellites and SNPs

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Relationship of Genetic Variation to Population Size in Wildlife

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Genetics and extinction

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The effect of RAD allele dropout on the estimation of genetic variation within and between populations.

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A Hierarchical Bayesian Model for Next-Generation Population Genomics

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Decline and conservation of bumble bees.

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Decline of bumble bees (Bombus) in the North American Midwest

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Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

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Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

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Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species.

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Genetic consequences of climatic oscillations in the Quaternary

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Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

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Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

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Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

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Insights into social insects from the genome of the honeybee Apis mellifera

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Accounting for bias from sequencing error in population genetic estimates

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G(ST) and its relatives do not measure differentiation

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Male flight distance and population substructure in the bumblebeeBombus terrestris

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Enhanced cross-species utility of conserved microsatellite markers in shorebirds

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Neglect of genetic diversity in implementation of the convention on biological diversity

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history

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Estimation of bumblebee queen dispersal distances using sibship reconstruction method

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Fast and accurate short read alignment with Burrows-Wheeler transform

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The Sequence Alignment/Map format and SAMtools

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Adaptive evolution of multiple traits through multiple mutations at a single gene

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Comparative genetic analyses of historical and contemporary collections highlight contrasting demographic histories for the bumble bees Bombus pensylvanicus and B. impatiens in Illinois

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Patterns of range-wide genetic variation in six North American bumble bee (Apidae: Bombus) species.

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Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

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Molecular signatures of natural selection

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SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

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Analysis of a normalised expressed sequence tag (EST) library from a key pollinator, the bumblebee Bombus terrestris

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To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

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Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments

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Impacts of inbreeding on bumblebee colony fitness under field conditions

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Identifiers

10.1111/MEC.12636

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/24351120

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