Asymmetric epigenetic modification and elimination of rDNA sequences by polyploidization in wheat. (Q45230202)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25415973 AND SRC:MED&resulttype=core&format=json

23 February 2020

title

Asymmetric epigenetic modification and elimination of rDNA sequences by polyploidization in wheat (English)

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23 February 2020

1 reference

whole genome duplication

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2

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23 February 2020

author name string

Xiang Guo

series ordinal

1

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23 February 2020

publication date

18 November 2014

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23 February 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25415973 AND SRC:MED&resulttype=core&format=json

23 February 2020

volume

26

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23 February 2020

issue

11

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23 February 2020

page(s)

4311-4327

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mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat

23 February 2020

cites work

1 reference

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Genome evolution due to allopolyploidization in wheat

27 August 2018

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Genome-wide analysis of Stowaway-like MITEs in wheat reveals high sequence conservation, gene association, and genomic diversification.

27 August 2018

1 reference

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Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis.

27 August 2018

1 reference

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Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines

27 August 2018

1 reference

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Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

27 August 2018

1 reference

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Wheat hybridization and polyploidization results in deregulation of small RNAs

27 August 2018

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Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

27 August 2018

1 reference

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Nucleolin is required for DNA methylation state and the expression of rRNA gene variants in Arabidopsis thaliana

27 August 2018

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Homoeolog-specific transcriptional bias in allopolyploid wheat

27 August 2018

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Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation

27 August 2018

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Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

27 August 2018

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Genome evolution in allopolyploid wheat--a revolutionary reprogramming followed by gradual changes

27 August 2018

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Genomic expression dominance in allopolyploids

27 August 2018

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Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium)

27 August 2018

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Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins

27 August 2018

1 reference

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Interplay of ribosomal DNA loci in nucleolar dominance: dominant NORs are up-regulated by chromatin dynamics in the wheat-rye system.

27 August 2018

1 reference

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Genomic plasticity and the diversity of polyploid plants

27 August 2018

1 reference

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Evolution of rDNA in Nicotiana allopolyploids: a potential link between rDNA homogenization and epigenetics

27 August 2018

1 reference

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Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype

27 August 2018

1 reference

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The evolutionary consequences of polyploidy

27 August 2018

1 reference

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RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena

27 August 2018

1 reference

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CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing.

27 August 2018

1 reference

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Repetitive sequences in complex genomes: structure and evolution

27 August 2018

1 reference

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Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids

27 August 2018

1 reference

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Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

27 August 2018

1 reference

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Nucleolar dominance: a model for rRNA gene silencing

27 August 2018

1 reference

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Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance

27 August 2018

1 reference

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Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

27 August 2018

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Recombination Regulation by Transcription-Induced Cohesin Dissociation in rDNA Repeats

27 August 2018

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Novel patterns of gene expression in polyploid plants

27 August 2018

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Hybridization and genome size evolution: timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species

27 August 2018

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Rapid and repeatable elimination of a parental genome-specific DNA repeat (pGc1R-1a) in newly synthesized wheat allopolyploids

27 August 2018

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Detecting differential expression of parental or progenitor alleles in genetic hybrids and allopolyploids.

27 August 2018

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Allopolyploidy--a shaping force in the evolution of wheat genomes

27 August 2018

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The significance of responses of the genome to challenge

27 August 2018

1 reference

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Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome

27 August 2018

1 reference

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Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize

27 August 2018

1 reference

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Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277213

Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277213

A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277213

Natural variation in nucleolar dominance reveals the relationship between nucleolus organizer chromatin topology and rRNA gene transcription in Arabidopsis

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277213

Formation of stable epialleles and their paramutation-like interaction in tetraploid Arabidopsis thaliana.

27 August 2018

1 reference

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Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277213

Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat

27 August 2018

1 reference

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Methylation of histone h3 at lysine 9 targets programmed DNA elimination in tetrahymena

27 August 2018

1 reference

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Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

27 August 2018

1 reference

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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

27 August 2018

1 reference

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Functional analysis of diploid wheat rRNA promoter by transient expression

27 August 2018

1 reference

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Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

27 August 2018

1 reference

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Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

27 August 2018

1 reference

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Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

27 August 2018

1 reference

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Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

27 August 2018

1 reference

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The epigenetics of nucleolar dominance

27 August 2018

1 reference

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Genetic and epigenetic interactions in allopolyploid plants

27 August 2018

1 reference

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Genome evolution in polyploids

27 August 2018

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27 August 2018

12 December 2020

Phylogenetic reconstruction based on low copy DNA sequence data in an allopolyploid: the B genome of wheat.

1 reference

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Rapid Elimination of Low-Copy DNA Sequences in Polyploid Wheat: A Possible Mechanism for Differentiation of Homoeologous Chromosomes

27 August 2018

1 reference

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Correlation between the size of the intergenic regulatory region, the status of cytosine methylation of rRNA genes and nucleolar expression in wheat

27 August 2018

1 reference

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Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium).

27 August 2018

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Ribosomal RNA multigene loci: nomads of the Triticeae genomes

27 August 2018

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Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

27 August 2018

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12 December 2020

Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Israel

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Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids

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Cytosine methylation and nucleolar dominance in cereal hybrids

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12 December 2020

Variation at the Nor loci in triticale derived from tissue culture

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12 December 2020

Different species-specific chromosome translocations in Triticum timopheevii and T. turgidum support the diphyletic origin of polyploid wheats

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12 December 2020

Elimination of 5S DNA unit classes in newly formed allopolyploids of the genera Aegilops and Triticum

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12 December 2020

Short communication: the cell cycle dependent phosphorylation of histone H3 is correlated with the condensation of plant mitotic chromosomes

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12 December 2020

Map-based analysis of genes affecting the brittle rachis character in tetraploid wheat (Triticum turgidum L.).

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12 December 2020

rRNA gene activity and control of expression mediated by methylation and imprinting during embryo development in wheat x rye hybrids

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12 December 2020

Alterations in subtelomeric tandem repeats during early stages of allopolyploidy in wheat

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12 December 2020

The identification of the nucleolus organiser chromosomes of diploid wheat

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12 December 2020

Comparison of real-time PCR with SYBR Green I or 5'-nuclease assays and dot-blot hybridization with rDNA-targeted oligonucleotide probes in quantification of selected faecal bacteria

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12 December 2020

Identification of the entire chromosome complement of bread wheat by two-colour FISH

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12 December 2020

Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum

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12 December 2020

Immediate unidirectional epigenetic reprogramming of NORs occurs independently of rDNA rearrangements in synthetic and natural forms of a polyploid species Brassica napus

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12 December 2020

Trends in site-number change of rDNA loci during polyploid evolution in Sanguisorba (Rosaceae)

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12 December 2020

Polyploidization-induced genome variation in triticale

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12 December 2020

Multiple patterns of rDNA evolution following polyploidy in Oryza

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12 December 2020

Polyploidy: doubling up for evolutionary success

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12 December 2020

Genetic and epigenetic changes of rDNA in a synthetic allotetraploid, Aegilops sharonensis × Ae. umbellulata

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Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences

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Identifiers

DOI

10.1105/TPC.114.129841

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25415973 AND SRC:MED&resulttype=core&format=json

23 February 2020

PMC publication ID

4277213

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25415973 AND SRC:MED&resulttype=core&format=json