A multiobjective method for robust identification of bacterial small non-coding RNAs. (Q44904086)

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21 March 2020

title

A multiobjective method for robust identification of bacterial small non-coding RNAs (English)

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21 March 2020

2

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21 March 2020

Coral del Val

series ordinal

4

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21 March 2020

author name string

Javier Arnedo

series ordinal

1

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21 March 2020

Igor Zwir

series ordinal

3

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21 March 2020

language of work or name

English

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publication date

23 June 2014

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21 March 2020

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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21 March 2020

volume

30

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21 March 2020

issue

20

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21 March 2020

page(s)

2875-2882

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Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

21 March 2020

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Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics

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Non–coding RNA genes and the modern RNA world

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Rfam: annotating non-coding RNAs in complete genomes

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Defining the plasticity of transcription factor binding sites by Deconstructing DNA consensus sequences: the PhoP-binding sites among gamma/enterobacteria

21 January 2018

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Predicting sRNAs and their targets in bacteria

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Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing

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21 January 2018

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Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

21 January 2018

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High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs

21 January 2018

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Assessing computational tools for the discovery of small RNA genes in bacteria

21 January 2018

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The Rcs phosphorelay: a complex signal transduction system

21 January 2018

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Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

21 January 2018

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

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Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

21 January 2018

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Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

21 January 2018

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A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome

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Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs

21 January 2018

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Noncoding RNA gene detection using comparative sequence analysis

21 January 2018

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A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

21 January 2018

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The primary transcriptome of the major human pathogen Helicobacter pylori

21 January 2018

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Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

21 January 2018

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Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

21 January 2018

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21 January 2018

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Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021

21 January 2018

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Two discrete elements are required for the replication of a repABC plasmid: an antisense RNA and a stem-loop structure

21 January 2018

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21 January 2018

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Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics

21 January 2018

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Fast and reliable prediction of noncoding RNAs

21 January 2018

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Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines

21 January 2018

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Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

21 January 2018

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21 January 2018

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Analysis of differentially-regulated genes within a regulatory network by GPS genome navigation.

21 January 2018

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10.1093/BIOINFORMATICS/BTU398

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958812 AND SRC:MED&resulttype=core&format=json

journals/bioinformatics/ArnedoRZV14

21 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958812 AND SRC:MED&resulttype=core&format=json