Computational study of the catalytic domain of human neutrophil collagenase. specific role of the S3 and S'3 subsites in the interaction with a phosphonate inhibitor. (Q44167541)

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scientific article published in March 2002

Language	Label	Description	Also known as
English	Computational study of the catalytic domain of human neutrophil collagenase. specific role of the S3 and S'3 subsites in the interaction with a phosphonate inhibitor.	scientific article published in March 2002

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scholarly article

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12363219 AND SRC:MED&resulttype=core&format=json

13 December 2019

Computational study of the catalytic domain of human neutrophil collagenase. specific role of the S3 and S'3 subsites in the interaction with a phosphonate inhibitor (English)

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12363219 AND SRC:MED&resulttype=core&format=json

13 December 2019

Danilo Roccatano

2

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13 December 2019

Massimiliano Aschi

1

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13 December 2019

author name string

Alfredo Di Nola

3

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13 December 2019

Carlo Gallina

4

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13 December 2019

Enrico Gavuzzo

5

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13 December 2019

Giorgio Pochetti

6

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13 December 2019

Michael Pieper

7

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13 December 2019

Harald Tschesche

8

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13 December 2019

Fernando Mazza

9

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13 December 2019

publication date

1 March 2002

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13 December 2019

Journal of Computer - Aided Molecular Design

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13 December 2019

16

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13 December 2019

3

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13 December 2019

213-225

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13 December 2019

Structure of human neutrophil collagenase reveals large S1′ specificity pocket

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural implications for the role of the N terminus in the 'superactivation' of collagenases. A crystallographic study

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of malonic acid-based inhibitors bound to human neutrophil collagenase. A new binding mode explains apparently anomalous data

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural features of a superfamily of zinc-endopeptidases: the metzincins

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The X-ray crystal structure of the catalytic domain of human neutrophil collagenase inhibited by a substrate analogue reveals the essentials for catalysis and specificity

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Refined 2.0 A X-ray crystal structure of the snake venom zinc-endopeptidase adamalysin II. Primary and tertiary structure determination, refinement, molecular structure and comparison with astacin, collagenase and thermolysin

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1.8‐Å Crystal Structure of the Catalytic Domain of Human Neutrophil Collagenase (Matrix Metalloproteinase‐8) Complexed with a Peptidomimetic Hydroxamate Primed‐Side Inhibitor with a Distinct Selectivity Profile

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Families of metalloendopeptidases and their relationships

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-proline cis peptide bonds in proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative sequence specificities of human 72- and 92-kDa gelatinases (type IV collagenases) and PUMP (matrilysin)

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Astacins, serralysins, snake venom and matrix metalloproteinases exhibit identical zinc-binding environments (HEXXHXXGXXH and Met-turn) and topologies and should be grouped into a common family, the 'metzincins'

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

2 angstrom X-ray structure of adamalysin II complexed with a peptide phosphonate inhibitor adopting a retro-binding mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The metzincins — Topological and sequential relations between the astacins, adamalysins, serralysins, and matrixins (collagenases) define a super family of zinc‐peptidases

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural interaction of natural and synthetic inhibitors with the venom metalloproteinase, atrolysin C (form d)

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure determination and analysis of human neutrophil collagenase complexed with a hydroxamate inhibitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synthetic and endogenous inhibitors of snake venom metalloproteinases

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of adamalysin II and MMPs by phosphonate analogues of snake venom peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method to detect nonproline cis peptide bonds in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First structure of a snake venom metalloproteinase: a prototype for matrix metalloproteinases/collagenases

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two crystal structures of human neutrophil collagenase, one complexed with a primed- and the other with an unprimed-side inhibitor: implications for drug design

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Substrate specificity of the human matrix metalloproteinase stromelysin and the development of continuous fluorometric assays

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structures of adamalysin II with peptidic inhibitors. Implications for the design of tumor necrosis factor alpha convertase inhibitors

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence specificities of human fibroblast and neutrophil collagenases

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phosphonate inhibitors of adamalysin II and matrix metalloproteinases

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

X-ray structures of human neutrophil collagenase complexed with peptide hydroxamate and peptide thiol inhibitors. Implications for substrate binding and rational drug design

1 reference

https://pubmed.ncbi.nlm.nih.gov/12363219

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1023/A:1020178822319

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12363219 AND SRC:MED&resulttype=core&format=json

13 December 2019

DBLP publication ID

journals/jcamd/AschiRNGGPPTM02

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12363219 AND SRC:MED&resulttype=core&format=json

13 December 2019

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