Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline (Q44012905)

28 November 2017

title

Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline (English)

1 reference

28 November 2017

0 references

7

1 reference

28 November 2017

Daniel Gautheret

8

0 references

author name string

Claire Toffano-Nioche

1

1 reference

28 November 2017

Yufei Luo

2

1 reference

28 November 2017

Claire Kuchly

3

1 reference

28 November 2017

Claire Wallon

4

1 reference

28 November 2017

Delphine Steinbach

5

1 reference

28 November 2017

Matthias Zytnicki

6

1 reference

28 November 2017

publication date

25 June 2013

1 reference

28 November 2017

1 reference

28 November 2017

volume

63

1 reference

28 November 2017

issue

1

1 reference

28 November 2017

page(s)

60-65

1 reference

Identification of novel small RNAs using comparative genomics and microarrays

28 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Regulation of bacterial gene expression by riboswitches

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

tRNA as a positive regulator of transcription antitermination in B. subtilis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Genome-wide antisense transcription drives mRNA processing in bacteria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Rfam 11.0: 10 years of RNA families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Galaxy: a web-based genome analysis tool for experimentalists

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Galaxy: a platform for interactive large-scale genome analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Creating reusable tools from scripts: the Galaxy Tool Factory

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Fast and accurate short read alignment with Burrows-Wheeler transform

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

S-MART, a software toolbox to aid RNA-Seq data analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Artemis: sequence visualization and annotation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Antisense transcription is pervasive but rarely conserved in enteric bacteria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

Small RNAs in haloarchaea: identification, differential expression and biological function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

The Sequence Alignment/Map format and SAMtools

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2013.06.003

10.1016/J.YMETH.2013.06.003

7 January 2021

Identifiers

DOI

1 reference

28 November 2017

1 reference