RNAplex: a fast tool for RNA-RNA interaction search (Q43409460)

23 November 2017

title

RNAplex: a fast tool for RNA-RNA interaction search (English)

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23 November 2017

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23 November 2017

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23 November 2017

language of work or name

English

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publication date

23 April 2008

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23 November 2017

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23 November 2017

volume

24

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23 November 2017

issue

22

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23 November 2017

page(s)

2657-2663

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RNA-RNA interaction prediction and antisense RNA target search

23 November 2017

cites work

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Secondary structure prediction of interacting RNA molecules

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The expanding snoRNA world

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Partition function and base pairing probabilities of RNA heterodimers

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MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli

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Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom protein

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Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

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Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

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Fast folding and comparison of RNA secondary structures

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Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

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The role of site accessibility in microRNA target recognition

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Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells

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An RNA transcriptional regulator templates its own regulatory RNA.

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Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

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Potent effect of target structure on microRNA function.

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Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

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Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

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A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

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HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

21 January 2018

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A brain-specific microRNA regulates dendritic spine development

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TarBase: A comprehensive database of experimentally supported animal microRNA targets

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A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

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21 January 2018

RNA structure prediction

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A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis

21 January 2018

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A Novel Synapse-Associated Noncoding RNA

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21 January 2018

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Cloning of Caenorhabditis U2AF65: an alternatively spliced RNA containing a novel exon

21 January 2018

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Calculating nucleic acid secondary structure

21 January 2018

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

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10.1093/BIOINFORMATICS/BTN193

21 January 2018

Identifiers

DOI

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journals/bioinformatics/TaferH08

23 November 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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