Mechanism of auxin interaction with Auxin Binding Protein (ABP1): a molecular dynamics simulation study (Q42810430)

7 November 2017

Mechanism of auxin interaction with Auxin Binding Protein (ABP1): a molecular dynamics simulation study (English)

1 reference

7 November 2017

Rebecca C Wade

3

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author name string

Branimir Bertosa

series ordinal

1

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7 November 2017

Biserka Kojić-Prodić

series ordinal

2

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7 November 2017

Sanja Tomić

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4

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7 November 2017

language of work or name

English

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publication date

31 August 2007

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7 November 2017

11

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inferred from page(s)

published in

Biophysical Journal

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7 November 2017

94

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7 November 2017

1

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7 November 2017

27-37

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Auxin in action: signalling, transport and the control of plant growth and development

7 November 2017

1 reference

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CAVER: a new tool to explore routes from protein clefts, pockets and cavities

27 May 2018

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AXR4 is required for localization of the auxin influx facilitator AUX1.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Polar PIN localization directs auxin flow in plants

27 May 2018

1 reference

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PIN proteins perform a rate-limiting function in cellular auxin efflux

27 May 2018

1 reference

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Photoaffinity labeling of indole-3-acetic acid-binding proteins in maize

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Receptors for auxin: will it all end in TIRs?

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

27 May 2018

1 reference

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Do mammalian cytochrome P450s show multiple ligand access pathways and ligand channelling?

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

The Arabidopsis F-box protein TIR1 is an auxin receptor

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

The F-box protein TIR1 is an auxin receptor

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Plant development: auxin in loops

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Auxin: regulation, action, and interaction.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Auxin-dependent cell division and cell elongation. 1-Naphthaleneacetic acid and 2,4-dichlorophenoxyacetic acid activate different pathways.

27 May 2018

1 reference

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Funneling auxin action: specificity in signal transduction.

27 May 2018

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

27 May 2018

1 reference

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Cupins: the most functionally diverse protein superfamily?

27 May 2018

1 reference

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A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Auxin transport - shaping the plant

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Crystal structure of auxin-binding protein 1 in complex with auxin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

A short history of auxin-binding proteins.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Comparison of the dynamics of substrate access channels in three cytochrome P450s reveals different opening mechanisms and a novel functional role for a buried arginine

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Auxin regulates SCF(TIR1)-dependent degradation of AUX/IAA proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

An auxin-binding protein is localized to the plasma membrane of maize coleoptile cells: identification by photoaffinity labeling and purification of a 23-kda polypeptide

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Modelling of auxin-binding protein 1 suggests that its C-terminus and auxin could compete for a binding site that incorporates a metal ion and tryptophan residue 44.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities

27 May 2018

1 reference

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Nuclear receptor-DNA binding specificity: A COMBINE and Free-Wilson QSAR analysis

27 May 2018

1 reference

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Water penetration and escape in proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

27 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Retention of maize auxin-binding protein in the endoplasmic reticulum: quantifying escape and the role of auxin.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Modulation of K channels in Vicia stomatal guard cells by peptide homologs to the auxin-binding protein C terminus

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Molecular cloning and structural analysis of a gene from Zea mays (L.) coding for a putative receptor for the plant hormone auxin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Auxin-binding protein located in the endoplasmic reticulum of maize shoots: molecular cloning and complete primary structure

27 May 2018

1 reference

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WHAT IF: a molecular modeling and drug design program

27 May 2018

1 reference

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A view about the function of auxin-binding proteins at plasma membranes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

Specificity of Auxin-binding Sites on Maize Coleoptile Membranes as Possible Receptor Sites for Auxin Action

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

A new approach to predict the biological activity of molecules based on similarity of their interaction fields and the logP and logD values: application to auxins

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2134879

The auxin signal for protoplast swelling is perceived by extracellular ABP1.

16 August 2018

1 reference

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How do substrates enter and products exit the buried active site of cytochrome P450cam? 2. Steered molecular dynamics and adiabatic mapping of substrate pathways.

16 August 2018

1 reference

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MD Display: an interactive graphics program for visualization of molecular dynamics trajectories

16 August 2018

1 reference

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PLANT SCIENCE: Auxin Transport, but in Which Direction?

16 August 2018

1 reference

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Auxin-binding protein from coleoptile membranes of corn (Zea mays L.). I. Purification by immunological methods and characterization

1 December 2018

1 reference

12 December 2020

1 reference

12 December 2020

Polar auxin transport and patterning: grow with the flow

1 reference

12 December 2020

Conformational dynamics underlie the activity of the auxin-binding protein, Nt-abp1

1 reference

12 December 2020

Auxin transport: down and out and up again

1 reference

12 December 2020

The auxin-binding protein Nt-ERabp1 alone activates an auxin-like transduction pathway

1 reference

12 December 2020

Classification of auxin plant hormones by interaction property similarity indices

1 reference

12 December 2020

A novel immunological approach establishes that the auxin-binding protein, Nt-abp1, is an element involved in auxin signaling at the plasma membrane

1 reference

12 December 2020

10.1529/BIOPHYSJ.107.109025

Identifiers

DOI

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7 November 2017

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7 November 2017

PubMed publication ID

17766341

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