The Apostasia genome and the evolution of orchids (Q42690185)

4 November 2017

title

The Apostasia genome and the evolution of orchids (English)

1 reference

Author Correction: The Apostasia genome and the evolution of orchids

4 November 2017

corrigendum / erratum

1 reference

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Lorenzo Pecoraro

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Shingo Sakamoto

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Yi-Bo Luo

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

You-Yi Chen

24

0 references

Guo Qiang Zhang

Guo-Qiang Zhang

1

0 references

Wen-Chieh Tsai

Wen-Chieh Tsai

33

0 references

Yao-Cheng Lin

Yao-Cheng Lin

8

0 references

Masaru Ohme-Takagi

Masaru Ohme-Takagi

27

0 references

Zhen Li

Zhen Li

3

0 references

Yves Van de Peer

Yves Van de Peer

34

0 references

author name string

Ke-Wei Liu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Rolf Lohaus

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Yu-Yun Hsiao

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Shan-Ce Niu

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Jie-Yu Wang

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Qing Xu

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Li-Jun Chen

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Kouki Yoshida

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Sumire Fujiwara

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Zhi-Wen Wang

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Yong-Qiang Zhang

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Meina Wang

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Guo-Hui Liu

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Hui-Xia Huang

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Xin-Ju Xiao

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Min Lin

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Xin-Yi Wu

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Wan-Lin Wu

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Song-Bin Chang

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Masafumi Yagi

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Si-Jin Zeng

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Ching-Yu Shen

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Chuan-Ming Yeh

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

Zhong-Jian Liu

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

language of work or name

English

0 references

publication date

13 September 2017

1 reference

4 November 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

volume

549

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

issue

7672

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

379-383

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28902843 AND SRC:MED&resulttype=core&format=json

Orchid phylogenomics and multiple drivers of their extraordinary diversification

13 June 2020

cites work

1 reference

A phylogenetic analysis of Apostasioideae (Orchidaceae) based on ITS, trnL-F and matK sequences

21 January 2018

1 reference

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

21 January 2018

1 reference

The genome sequence of the orchid Phalaenopsis equestris

21 January 2018

1 reference

The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution

21 January 2018

1 reference

CAFE: a computational tool for the study of gene family evolution

21 January 2018

1 reference

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

21 January 2018

1 reference

Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots

21 January 2018

1 reference

The pineapple genome and the evolution of CAM photosynthesis

21 January 2018

1 reference

The evolutionary significance of polyploidy

21 January 2018

1 reference

Four DEF-like MADS box genes displayed distinct floral morphogenetic roles in Phalaenopsis orchid

21 January 2018

1 reference

Flower development of Phalaenopsis orchid involves functionally divergent SEPALLATA-like genes

21 January 2018

1 reference

Why are orchid flowers so diverse? Reduction of evolutionary constraints by paralogues of class B floral homeotic genes.

21 January 2018

1 reference

Functional conservation of MIKC*-Type MADS box genes in Arabidopsis and rice pollen maturation

21 January 2018

1 reference

How MIKC* MADS-box genes originated and evidence for their conserved function throughout the evolution of vascular plant gametophytes.

21 January 2018

1 reference

The Emerging Importance of Type I MADS Box Transcription Factors for Plant Reproduction

21 January 2018

1 reference

Aerial roots of epiphytic orchids: the velamen radicum and its role in water and nutrient uptake

21 January 2018

1 reference

The velamen protects photosynthetic orchid roots against UV-B damage, and a large dated phylogeny implies multiple gains and losses of this function during the Cenozoic

21 January 2018

1 reference

Epiphytism and pollinator specialization: drivers for orchid diversity?

21 January 2018

1 reference

21 January 2018

1 reference

Architecture and evolution of a minute plant genome.

21 January 2018

1 reference

An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture

21 January 2018

1 reference

MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress

21 January 2018

1 reference

Genome size variation in Orchidaceae subfamily Apostasioideae: filling the phylogenetic gap

21 January 2018

1 reference

Genome size diversity in orchids: consequences and evolution

21 January 2018

1 reference

Genomic mapping by fingerprinting random clones: a mathematical analysis

21 January 2018

1 reference

ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 January 2018

1 reference

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

21 January 2018

1 reference

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

21 January 2018

1 reference

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

21 January 2018

1 reference

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

21 January 2018

1 reference

A hybrid approach for de novo human genome sequence assembly and phasing

21 January 2018

1 reference

Repbase Update, a database of repetitive elements in eukaryotic genomes

21 January 2018

1 reference

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

21 January 2018

1 reference

A novel hybrid gene prediction method employing protein multiple sequence alignments

21 January 2018

1 reference

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders

21 January 2018

1 reference

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

21 January 2018

1 reference

Automated generation of heuristics for biological sequence comparison

21 January 2018

1 reference

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

1 reference

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 January 2018

1 reference

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

21 January 2018

1 reference

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

21 January 2018

1 reference

InterProScan--an integration platform for the signature-recognition methods in InterPro

21 January 2018

1 reference

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

1 reference

Infernal 1.0: inference of RNA alignments

21 January 2018

1 reference

Trimmomatic: a flexible trimmer for Illumina sequence data

21 January 2018

1 reference

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

21 January 2018

1 reference

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana

21 January 2018

1 reference

Transcriptome sequencing to produce SNP-based genetic maps of onion

21 January 2018

1 reference

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

1 reference

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 January 2018

1 reference

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

21 January 2018

1 reference

Land plant evolutionary timeline: gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates

21 January 2018

1 reference

Inference of genome duplications from age distributions revisited

21 January 2018

1 reference

An efficient algorithm for large-scale detection of protein families

21 January 2018

1 reference

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets

21 January 2018

1 reference

A greedy, graph-based algorithm for the alignment of multiple homologous gene lists

21 January 2018

1 reference

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

21 January 2018

1 reference

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

21 January 2018

1 reference

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

21 January 2018

1 reference

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

21 January 2018

1 reference

Bayesian phylogenetics with BEAUti and the BEAST 1.7

21 January 2018

1 reference

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

21 January 2018

1 reference

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

21 January 2018

1 reference

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

21 January 2018

1 reference

Dating the origin of the Orchidaceae from a fossil orchid with its pollinator

21 January 2018

1 reference

The age of major monocot groups inferred from 800 rbcL sequences

21 January 2018

1 reference

21 January 2018

1 reference

Establishing a time-scale for plant evolution

21 January 2018

1 reference

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

21 January 2018

1 reference

Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.

21 January 2018

1 reference

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

21 January 2018

1 reference

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

21 January 2018

1 reference

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

21 January 2018

1 reference

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

21 January 2018

1 reference

SMART: recent updates, new developments and status in 2015.

21 January 2018

1 reference

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 January 2018

1 reference

21 January 2018

1 reference

7 January 2021

Apostasia shenzhenica, A New Species of Apostasioideae (Orchidaceae) from China

1 reference

7 January 2021

Genome-wide analysis of the MADS-box gene family in Populus trichocarpa

1 reference

7 January 2021

The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle

1 reference

7 January 2021

A new fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales).

1 reference

7 January 2021

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28902843

12 December 2020

inferred from PubMed ID database lookup

Fossil Clusiaceae from the late Cretaceous (Turonian) of New Jersey and implications regarding the history of bee pollination

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28902843

12 December 2020