Transcriptomic changes in an animal-bacterial symbiosis under modeled microgravity conditions. (Q42292419)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

title

Transcriptomic changes in an animal-bacterial symbiosis under modeled microgravity conditions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

0 references

0 references

0 references

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

author name string

Giorgio Casaburi

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

Irina Goncharenko-Foster

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

Alexandrea A Duscher

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

language of work or name

English

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publication date

10 April 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

volume

7

1 reference

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17 March 2020

page(s)

46318

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

17 March 2020

copyright license

start time

10 April 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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26 October 2017

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26 October 2017

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26 October 2017

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26 October 2017

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26 October 2017

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26 October 2017

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26 October 2017

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26 October 2017

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26 October 2017

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26 October 2017

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A scaling normalization method for differential expression analysis of RNA-seq data

26 October 2017

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Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

26 October 2017

1 reference

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Gene ontology analysis for RNA-seq: accounting for selection bias

26 October 2017

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26 October 2017

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26 October 2017

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Acclimation during space flight: effects on human physiology

26 October 2017

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26 October 2017

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Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites

26 October 2017

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Recognition between symbiotic Vibrio fischeri and the haemocytes of Euprymna scolopes

26 October 2017

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26 October 2017

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Innate immunity and intestinal microbiota in the development of Type 1 diabetes

26 October 2017

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An ecological and evolutionary perspective on human-microbe mutualism and disease

26 October 2017

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Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.

26 October 2017

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

26 October 2017

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Use of animal models for space flight physiology studies, with special focus on the immune system.

26 October 2017

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The winnowing: establishing the squid-vibrio symbiosis

26 October 2017

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Microbial responses to microgravity and other low-shear environments

26 October 2017

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Recent findings on phenoloxidase activity and antimicrobial activity of hemocyanins

26 October 2017

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

26 October 2017

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Dominance of Vibrio fischeri in secreted mucus outside the light organ of Euprymna scolopes: the first site of symbiont specificity

26 October 2017

1 reference

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Space flight and oxidative stress

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Roles of Vibrio fischeri and nonsymbiotic bacteria in the dynamics of mucus secretion during symbiont colonization of the Euprymna scolopes light organ

26 October 2017

1 reference

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Cell culture for three-dimensional modeling in rotating-wall vessels: an application of simulated microgravity

26 October 2017

1 reference

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Establishment of an animal-bacterial association: recruiting symbiotic vibrios from the environment

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Vibrio fischeri lux genes play an important role in colonization and development of the host light organ

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Induction of a Gradual, Reversible Morphogenesis of Its Host’s Epithelial Brush Border by Vibrio fischeri

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Wound hypoxia and acidosis limit neutrophil bacterial killing mechanisms.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

26 October 2017

1 reference

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Basic local alignment search tool

26 October 2017

1 reference

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Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Symbiont recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

No Change in the Mucosal Gut Microbiome is Associated With Celiac Disease-Specific Microbiome Alteration in Adult Patients

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Environmental cues and symbiont microbe-associated molecular patterns function in concert to drive the daily remodelling of the crypt-cell brush border of the Euprymna scolopes light organ

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

The dual nature of haemocyanin in the establishment and persistence of the squid-vibrio symbiosis.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Simulated microgravity-induced mitochondrial dysfunction in rat cerebral arteries

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

The challenging environment on board the International Space Station affects endothelial cell function by triggering oxidative stress through thioredoxin interacting protein overexpression: the ESA-SPHINX experiment.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

An altered gut microbiome profile in a child affected by Crohn's disease normalized after nutritional therapy

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Age- and morph-dependent activation of the lysosomal system and Buchnera degradation in aphid endosymbiosis.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

NO means 'yes' in the squid-vibrio symbiosis: nitric oxide (NO) during the initial stages of a beneficial association

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Space shuttle flight (STS-90) enhances degradation of rat myosin heavy chain in association with activation of ubiquitin-proteasome pathway

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Growth and flagellation of Vibrio fischeri during initiation of the sepiolid squid light organ symbiosis

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

Sampling the Light-Organ Microenvironment of Euprymna scolopes: Description of a Population of Host Cells in Association With the Bacterial Symbiont Vibrio fischeri

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385879

A Transient Exposure to Symbiosis-Competent Bacteria Induces Light Organ Morphogenesis in the Host Squid

30 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038/SREP46318

21 January 2018

1 reference

12 December 2020

Cathepsin L maturation and activity is impaired in macrophages harboring M. avium and M. tuberculosis

1 reference

12 December 2020

Responses of host hemocytes during the initiation of the squid-Vibrio symbiosis

1 reference

12 December 2020

Epidemiology of Staphylococcus aureus during space flight

1 reference

12 December 2020

Induction of apoptosis by cooperative bacteria in the morphogenesis of host epithelial tissues

1 reference

12 December 2020

Identifiers

DOI

10.1038/SREP46318

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28393904 AND SRC:MED&resulttype=core&format=json

17 March 2020

PubMed publication ID

28393904

1 reference