Oxalyl-coenzyme A reduction to glyoxylate is the preferred route of oxalate assimilation in Methylobacterium extorquens AM1. (Q42190394)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22493020 AND SRC:MED&resulttype=core&format=json

28 January 2020

title

Oxalyl-coenzyme A reduction to glyoxylate is the preferred route of oxalate assimilation in Methylobacterium extorquens AM1 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22493020 AND SRC:MED&resulttype=core&format=json

Methylobacterium extorquens

28 January 2020

main subject

object named as

Methylobacterium extorquens

1 reference

3

1 reference

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28 January 2020

author name string

Kathrin Schneider

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22493020 AND SRC:MED&resulttype=core&format=json

28 January 2020

Elizabeth Skovran

series ordinal

2

1 reference

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28 January 2020

publication date

6 April 2012

1 reference

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28 January 2020

published in

Journal of Bacteriology

1 reference

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28 January 2020

volume

194

1 reference

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28 January 2020

issue

12

1 reference

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28 January 2020

page(s)

3144-3155

1 reference

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Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

28 January 2020

cites work

1 reference

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The ethylmalonyl-CoA pathway is used in place of the glyoxylate cycle by Methylobacterium extorquens AM1 during growth on acetate.

26 October 2017

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Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1.

26 October 2017

1 reference

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Rhodobacter sphaeroides Uses a Reductive Route via Propionyl Coenzyme A To Assimilate 3-Hydroxypropionate

26 October 2017

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Use of an isothermal microcalorimetry assay to characterize microbial oxalotrophic activity.

26 October 2017

1 reference

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Alternative route for glyoxylate consumption during growth on two-carbon compounds by Methylobacterium extorquens AM1.

26 October 2017

1 reference

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The apparent malate synthase activity of Rhodobacter sphaeroides is due to two paralogous enzymes, (3S)-Malyl-coenzyme A (CoA)/{beta}-methylmalyl-CoA lyase and (3S)- Malyl-CoA thioesterase

26 October 2017

1 reference

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On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics

26 October 2017

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Metabolite profiling uncovers plasmid-induced cobalt limitation under methylotrophic growth conditions

26 October 2017

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Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

26 October 2017

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Carboxylation mechanism and stereochemistry of crotonyl-CoA carboxylase/reductase, a carboxylating enoyl-thioester reductase

26 October 2017

1 reference

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Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

26 October 2017

1 reference

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Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics.

26 October 2017

1 reference

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Use of the frc gene as a molecular marker to characterize oxalate-oxidizing bacterial abundance and diversity structure in soil

26 October 2017

1 reference

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Identification of a fourth formate dehydrogenase in Methylobacterium extorquens AM1 and confirmation of the essential role of formate oxidation in methylotrophy.

26 October 2017

1 reference

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Quantitative mass spectrometry in proteomics: a critical review

26 October 2017

1 reference

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Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway

26 October 2017

1 reference

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Structural and functional analysis of cellular networks with CellNetAnalyzer

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Identification of oxalotrophic bacteria by neural network analysis of numerical phenetic data.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Carbon assimilation by Pseudomonas oxalaticus (OXI). 4. Metabolism of oxalate in cell-free extracts of the organism grown on oxalate

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Anabolic Incorporation of Oxalate by Oxalobacter formigenes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Methylotrophic metabolism is advantageous for Methylobacterium extorquens during colonization of Medicago truncatula under competitive conditions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Calcium oxalate in plants: formation and function

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Identification of genes involved in the glyoxylate regeneration cycle in Methylobacterium extorquens AM1, including two new genes, meaC and meaD

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

The enzymes of oxalate metabolism: unexpected structures and mechanisms

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Taxonomy of the genus Cupriavidus: a tale of lost and found

26 October 2017

1 reference

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Multiple formate dehydrogenase enzymes in the facultative methylotroph Methylobacterium extorquens AM1 are dispensable for growth on methanol

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Carbon assimilation by Pseudomonas oxalaticus (OX1). 3. Oxalate utilization during growth on oxalate

26 October 2017

1 reference

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CARBON ASSIMILATION BY PSEUDOMONAS OXALATICUS (OX1). 7. DECARBOXYLATION OF OXALYL-COENZYME A TO FORMYL-COENZYME A

26 October 2017

1 reference

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Carbon assimilation by Pseudomonas oxalaticus (OX 1). 2. Formate and carbon dioxide utilization by cell-free extracts of the organism grown on formate

26 October 2017

1 reference

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Carbon assimilation by Pseudomonas oxalaticus (OXI). 5. Purification and properties of glyoxylic dehydrogenase

26 October 2017

1 reference

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Studies on a new oxalate-decomposing bacterium, Pseudomonas oxalaticus.

26 October 2017

1 reference

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26 October 2017

Oxalotrophic bacteria.

1 reference

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Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view

26 October 2017

1 reference

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Glyoxylate regeneration pathway in the methylotroph Methylobacterium extorquens AM1

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Connection between poly-beta-hydroxybutyrate biosynthesis and growth on C(1) and C(2) compounds in the methylotroph Methylobacterium extorquens AM1.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Structure/function relationships in OxlT, the oxalate-formate transporter of oxalobacter formigenes. Assignment of transmembrane helix 11 to the translocation pathway.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Identification and mutation of a gene required for glycerate kinase activity from a facultative methylotroph, Methylobacterium extorquens AM1

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

DNA sequencing and expression of the formyl coenzyme A transferase gene, frc, from Oxalobacter formigenes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Genetics of serine pathway enzymes in Methylobacterium extorquens AM1: phosphoenolpyruvate carboxylase and malyl coenzyme A lyase

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Molecular cloning, DNA sequence, and gene expression of the oxalyl-coenzyme A decarboxylase gene, oxc, from the bacterium Oxalobacter formigenes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Genetics of the serine cycle in Methylobacterium extorquens AM1: identification, sequence, and mutation of three new genes involved in C1 assimilation, orf4, mtkA, and mtkB

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Microbial growth on oxalate by a route not involving glyoxylate carboligase

26 October 2017

1 reference

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Oxalobacter formigenes gen. nov., sp. nov.: oxalate-degrading anaerobes that inhabit the gastrointestinal tract

26 October 2017

1 reference

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Oxalate degradation by gastrointestinal bacteria from humans

26 October 2017

1 reference

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Measurement of protein using bicinchoninic acid

26 October 2017

1 reference

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Purification and characterization of oxalyl-coenzyme A decarboxylase from Oxalobacter formigenes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Purification and characterization of formyl-coenzyme A transferase from Oxalobacter formigenes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Taxonomy of oxalotrophic Methylobacterium strains.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

A protein having similarity with methylmalonyl-CoA mutase is required for the assimilation of methanol and ethanol by Methylobacterium extorquens AM1.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Molecular characterization of a chromosomal region involved in the oxidation of acetyl-CoA to glyoxylate in the isocitrate-lyase-negative methylotroph Methylobacterium extorquens AM1.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Molecular cloning, DNA sequencing, and biochemical analyses of Escherichia coli glyoxylate carboligase. An enzyme of the acetohydroxy acid synthase-pyruvate oxidase family

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Nanoscale ion-pair reversed-phase HPLC-MS for sensitive metabolome analysis.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

(2S)-Methylsuccinyl-CoA dehydrogenase closes the ethylmalonyl-CoA pathway for acetyl-CoA assimilation

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Sampling for metabolome analysis of microorganisms.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Carbon assimilation by Pseudomonas oxalaticus (OX 1). 1. Formate and carbon dioxide utilization during growth on formate

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Carbon assimilation by Pseudomonas oxalaticus (OX1). 6. Reactions of oxalyl-coenzyme A.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: purification and properties.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Broad-host-range cre-lox system for antibiotic marker recycling in gram-negative bacteria

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3370878

Assimilation of oxalate, acetate, and CO2 by Oxalobacter formigenes

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22493020

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Study of an alternate glyoxylate cycle for acetate assimilation by Rhodobacter sphaeroides

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22493020

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Absence of Oxalobacter formigenes in cystic fibrosis patients: a risk factor for hyperoxaluria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22493020

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JB.00288-12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22493020 AND SRC:MED&resulttype=core&format=json

28 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22493020 AND SRC:MED&resulttype=core&format=json

28 January 2020

PubMed publication ID

22493020

1 reference