Polynucleotide phosphorylase hinders mRNA degradation upon ribosomal protein S1 overexpression in Escherichia coli (Q42075370)

16 October 2017

Polynucleotide phosphorylase hinders mRNA degradation upon ribosomal protein S1 overexpression in Escherichia coli (English)

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16 October 2017

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Thomas Carzaniga

4

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Federica Briani

object named as

Federica Briani

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Gianni Dehò

object named as

Gianni Dehò

6

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author name string

Serena Curti

2

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16 October 2017

Francesca Rossi

3

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16 October 2017

Pierluigi Mauri

5

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16 October 2017

language of work or name

English

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publication date

29 September 2008

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16 October 2017

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16 October 2017

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16 October 2017

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16 October 2017

2417-2429

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describes a project that uses

16 October 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2578868/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Ribosomal protein S1 influences trans-translation in vitro and in vivo

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The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells

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The origin of polynucleotide phosphorylase domains

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A mutation in polynucleotide phosphorylase from Escherichia coli impairing RNA binding and degradosome stability

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Nucleic acid recognition by OB-fold proteins

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PNPase autocontrols its expression by degrading a double-stranded structure in the pnp mRNA leader

30 May 2018

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Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1.

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Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase E.

30 May 2018

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Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli

30 May 2018

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The last RNA-binding repeat of the Escherichia coli ribosomal protein S1 is specifically involved in autogenous control

30 May 2018

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RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli

30 May 2018

1 reference

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

30 May 2018

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Degradation of mRNA in bacteria: emergence of ubiquitous features

30 May 2018

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Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

30 May 2018

1 reference

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The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

30 May 2018

1 reference

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Polynucleotide phosphorylase of Escherichia coli is required for the establishment of bacteriophage P4 immunity

30 May 2018

1 reference

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Proteins associated with RNase E in a multicomponent ribonucleolytic complex

30 May 2018

1 reference

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A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

30 May 2018

1 reference

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OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences

30 May 2018

1 reference

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Use of a gene encoding a suppressor tRNA as a reporter of transcription: analyzing the action of the Nun protein of bacteriophage HK022.

30 May 2018

1 reference

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Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Polynucleotide phosphorylase of Escherichia coli induces the degradation of its RNase III processed messenger by preventing its translation

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Expression of the rpsO and pnp genes: structural analysis of a DNA fragment carrying their control regions

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Structure and functions of ribosomal protein S1.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Kinetics of Polymerization and Phosphorolysis Reactions of Escherichia coli Polynucleotide Phosphorylase. Evidence for Multiple Binding of Polynucleotide in Phosphorolysis

30 May 2018

1 reference

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Kinetics of Polymerization and Phosphorolysis Reactions of E. coli Polynucleotide Phosphorylase. Role of Oligonucleotides in Polymerization

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5' end.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Major cold shock protein of Escherichia coli

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Ribosomal protein S1 of Escherichia coli is the effector for the regulation of its own synthesis.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Rapid determination of nucleotides that define tRNA(Gly) acceptor identity

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

The relation between translation and mRNA degradation in the lacZ gene

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

E.coli polynucleotide phosphorylase expression is autoregulated through an RNase III-dependent mechanism

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Dissection of IncP conjugative plasmid transfer: definition of the transfer region Tra2 by mobilization of the Tra1 region in trans

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Genetic analysis of the immunity region of phage-plasmid P4.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Functional interaction of phospholipid hydroperoxide glutathione peroxidase with sperm mitochondrion-associated cysteine-rich protein discloses the adjacent cysteine motif as a new substrate of the selenoperoxidase.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Conserved domains in polynucleotide phosphorylase among eubacteria.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Changes in Escherichia coli transcriptome during acclimatization at low temperature.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Mutational analysis of polynucleotide phosphorylase from Escherichia coli.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

The relationship between translational control and mRNA degradation for the Escherichia coli threonyl-tRNA synthetase gene

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Ribosome-messenger recognition in the absence of the Shine-Dalgarno interactions.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Genetic analysis of polynucleotide phosphorylase structure and functions

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Photometric Assay for Polynucleotide Phosphorylase

1 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

A Rho-Dependent Transcription Termination Site Regulated by Bacteriophage P4 RNA Immunity Factor

1 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2578868

Primary structure of Escherichia coli ribosomal protein S1 and features of its functional domains

1 December 2018

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12 December 2020

An amber mutation in the gene rpsA for ribosomal protein S1 in Escherichia coli

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12 December 2020

Inefficient translation initiation causes premature transcription termination in the lacZ gene

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12 December 2020

RNase III cleavages in non-coding leaders of Escherichia coli transcripts control mRNA stability and genetic expression

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12 December 2020

Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli

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12 December 2020

Antisense RNA-dependent transcription termination sites that modulate lysogenic development of satellite phage P4

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12 December 2020

Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli

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12 December 2020

Effect of E. coli ribosomal protein S1 on the fidelity of the translational elongation step: reading and misreading of poly(U) and poly(dT)

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12 December 2020

Bacteriophage P4 immunity controlled by small RNAs via transcription termination

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12 December 2020

Identification of ribosomal protein S1 as a poly(A) binding protein in Escherichia coli

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12 December 2020

In the absence of translation, RNase E can bypass 5′ mRNA stabilizers in Escherichia coli 1 1Edited by I. B. Holland

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12 December 2020

Growth abnormalities in Hfr Derivatives of Escherichia coli Strain c

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12 December 2020

[Separation and identification of polynucleotide phosphorylase by electrophoresis on polyacrylamide gel]

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12 December 2020

Deoxyadenosine diphosphate as a substrate and inhibitor of polynucleotide phosphorylase of Micrococcus luteus. 3. Copolymerization of adenosine diphosphate and deoxyadenosine diphosphate

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12 December 2020

Identifiers

DOI

10.1261/RNA.1123908

1 reference

16 October 2017

1 reference

16 October 2017

PubMed publication ID

18824515

1 reference