Single-molecule measurements of the CCR5 mRNA unfolding pathways. (Q41900814)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24411256 AND SRC:MED&resulttype=core&format=json

4 March 2020

title

Single-molecule measurements of the CCR5 mRNA unfolding pathways (English)

1 reference

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4 March 2020

2

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4 March 2020

Jonathan D. Dinman

5

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4 March 2020

author name string

Michel de Messieres

1

1 reference

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4 March 2020

Ashton Trey Belew

3

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4 March 2020

Arturas Meskauskas

4

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4 March 2020

Arthur La Porta

6

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4 March 2020

language of work or name

English

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publication date

1 January 2014

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4 March 2020

number of pages

9

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

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4 March 2020

volume

106

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4 March 2020

issue

1

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4 March 2020

page(s)

244-252

1 reference

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Programmed -1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding

4 March 2020

cites work

1 reference

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mRNA pseudoknot structures can act as ribosomal roadblocks

5 June 2018

1 reference

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Stem-loop structures can effectively substitute for an RNA pseudoknot in -1 ribosomal frameshifting.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

The ribosome uses two active mechanisms to unwind messenger RNA during translation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Measuring the Folding Landscape of a Harmonically Constrained Biopolymer

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast

5 June 2018

1 reference

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Free energy profiles from single-molecule pulling experiments

5 June 2018

1 reference

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The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting

5 June 2018

1 reference

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Achieving a golden mean: mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins

5 June 2018

1 reference

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Characterization of photoactivated singlet oxygen damage in single-molecule optical trap experiments.

5 June 2018

1 reference

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Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting

5 June 2018

1 reference

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PRFdb: a database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals

5 June 2018

1 reference

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Frameshifting RNA pseudoknots: structure and mechanism

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Following translation by single ribosomes one codon at a time.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

The design of drugs for HIV and HCV

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Characterization of the mechanical unfolding of RNA pseudoknots

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Viral RNA pseudoknots: versatile motifs in gene expression and replication

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

General nature of the genetic code for proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Mfold web server for nucleic acid folding and hybridization prediction

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Probing protein-DNA interactions by unzipping a single DNA double helix

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Probing the relation between force--lifetime--and chemistry in single molecular bonds

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Kinetics of ribosomal pausing during programmed -1 translational frameshifting

5 June 2018

1 reference

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The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Stretching DNA with optical tweezers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Programmed translational frameshifting.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Multiple extracellular elements of CCR5 and HIV-1 entry: dissociation from response to chemokines

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Resistance to HIV-1 infection in caucasian individuals bearing mutant alleles of the CCR-5 chemokine receptor gene

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

HIV-1 entry into CD4 cells is mediated by the chemokine receptor CC-CKR-5

5 June 2018

1 reference

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Biological applications of optical forces

5 June 2018

1 reference

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A new principle of RNA folding based on pseudoknotting

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Characterization of ribosomal frameshifting in HIV-1 gag-pol expression

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Folding of Human Telomerase RNA Pseudoknot Using Ion-Jump and Temperature-Quench Simulations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Mechanical unfolding of the beet western yellow virus -1 frameshift signal.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Intrinsic rates and activation free energies from single-molecule pulling experiments

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

Reversible unfolding of single RNA molecules by mechanical force

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907219

An ‘integrated model’ of programmed ribosomal frameshifting

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24411256

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.BPJ.2013.09.036

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24411256 AND SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

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4 March 2020

PubMed publication ID

24411256

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24411256 AND SRC:MED&resulttype=core&format=json